Content area

Abstract

While extracting dynamics parameters from backbone ^sup 15^N relaxation measurements in proteins has become routine over the past two decades, it is increasingly recognized that accurate quantitative analysis can remain limited by the potential presence of systematic errors associated with the measurement of ^sup 15^N R^sub 1^ and R^sub 2^ or R^sub 1ρ^ relaxation rates as well as heteronuclear ^sup 15^N-{^sup 1^H} NOE values. We show that systematic errors in such measurements can be far larger than the statistical error derived from either the observed signal-to-noise ratio, or from the reproducibility of the measurement. Unless special precautions are taken, the problem of systematic errors is shown to be particularly acute in perdeuterated systems, and even more so when TROSY instead of HSQC elements are used to read out the ^sup 15^N magnetization through the NMR-sensitive ^sup 1^H nucleus. A discussion of the most common sources of systematic errors is presented, as well as TROSY-based pulse schemes that appear free of systematic errors to the level of <1 %. Application to the small perdeuterated protein GB3, which yields exceptionally high S/N and therefore is an ideal test molecule for detection of systematic errors, yields relaxation rates that show considerably less residue by residue variation than previous measurements. Measured R^sub 2^'/R^sub 1^' ratios fit an axially symmetric diffusion tensor with a Pearson's correlation coefficient of 0.97, comparable to fits obtained for backbone amide RDCs to the Saupe matrix.[PUBLICATION ABSTRACT]

Details

Title
Measurement of ^sup 15^N relaxation rates in perdeuterated proteins by TROSY-based methods
Publication title
Volume
53
Issue
3
Pages
209-21
Publication year
2012
Publication date
Jul 2012
Publisher
Springer Nature B.V.
Place of publication
Dordrecht
Country of publication
Netherlands
ISSN
09252738
e-ISSN
15735001
Source type
Scholarly Journal
Language of publication
English
Document type
Feature, Journal Article
Accession number
22689066
ProQuest document ID
1030118520
Document URL
https://www.proquest.com/scholarly-journals/measurement-sup-15-n-relaxation-rates/docview/1030118520/se-2?accountid=208611
Copyright
Springer Science+Business Media B.V. 2012
Last updated
2024-10-05
Database
ProQuest One Academic