Accession numbers for 8 assemblies included in this analysis are missing from S2 Table. These accession numbers are: MJIT00000000, MJIU00000000, MJIV00000000, MJIW00000000, MJIX00000000, MJIY00000000, MJIZ00000000, MJJA00000000. Please view the correct S2 Table below.
These accession numbers are also missing from the Data Availability statement. The correct statement is: All complete genome assemblies are available from the NCBI Genbank database (accession numbers CP017327, CP017328, CP017329, CP017330, CP017331, CP017332, CP017333, CP017334, CP017335, CP017336, CP017337, CP017338, CP017339, CP017340, CP017341, CP017342, CP017343, MJIT00000000, MJIU00000000, MJIV00000000, MJIW00000000, MJIX00000000, MJIY00000000, MJIZ00000000, MJJA00000000). All sequencing data is available from the NCBI Sequence Read Archive database (accession numbers SRR3924583, SRR3924584, SRR3924595, SRR3924606, SRR3924617, SRR3924628, SRR3924639, SRR3924647, SRR3924648, SRR3924649, SRR3924585, SRR3924586, SRR3924587, SRR3924588, SRR3924589, SRR3924590, SRR3924591, SRR3924592, SRR3924593, SRR3924594, SRR3924596, SRR3924597, SRR3924598, SRR3924599, SRR3924600, SRR3924601, SRR3924602, SRR3924603, SRR3924604, SRR3924605, SRR3924607, SRR3924608, SRR3924609, SRR3924610, SRR3924611, SRR3924612, SRR3924613, SRR3924614, SRR3924615, SRR3924616, SRR3924618, SRR3924619, SRR3924620, SRR3924621, SRR3924622, SRR3924623, SRR3924624, SRR3924625, SRR3924626, SRR3924627, SRR3924629, SRR3924630, SRR3924631, SRR3924632, SRR3924633, SRR3924634, SRR3924635, SRR3924636, SRR3924637, SRR3924638, SRR3924640, SRR3924641, SRR3924642, SRR3924643, SRR3924644, SRR3924645, SRR3924646).
Supporting information
Showing 1/1: S2 Table.docx
S2 Table. NCBI BioProject, BioSample, SRA, and accession IDs for newly sequenced genomes and references
used in current study.
Sample
ID
Sample Name
BioProjectID
BioSampleID
SRA
Accession
NCBI Accession
CO37
CO37_USA_CO_2013
PRJNA328823
SAMN05391688
SRR3924583
N/A
OR1
OR1_USA_OR_2011
PRJNA328823
SAMN05391689
SRR3924584
N/A
SA18
SA18_SouthAfrica_2012
PRJNA328823
SAMN05391690
SRR3924595
N/A
FH 1965
FH_USA_MA_1965
PRJNA328823
SAMN05391691
SRR3924606
MJJA00000000
FH 2009
FH_USA_MA_2009
PRJNA328823
SAMN05391692
SRR3924617
CP017327
685
685_Denmark_1988
PRJNA328823
SAMN05391693
SRR3924628
CP017328
988
988_Canada_1992
PRJNA328823
SAMN05391694
SRR3924639
N/A
E57
E57_Egypt_2009
PRJNA328823
SAMN05391695
SRR3924647
CP017329
G10
G10_Guatemala_20110
PRJNA328823
SAMN05391696
SRR3924648
N/A
NM3
NM3_USA_NM_2010
PRJNA328823
SAMN05391697
SRR3924649
N/A
549
549_USA_WA_1965
PRJNA328823
SAMN05391698
SRR3924585
CP017330
WV9
WV9_USA_WV_2012
PRJNA328823
SAMN05391699
SRR3924586
N/A
FL8
FL8_USA_FL_2012
PRJNA328823
SAMN05391700
SRR3924587
CP017331
986
986_Kenya_1998
PRJNA328823
SAMN05391701
SRR3924588
MJIZ00000000
K21
K21_Kenya_2010
PRJNA328823
SAMN05391702
SRR3924589
MJIY00000000
G6
G6_Guatemala_2010
PRJNA328823
SAMN05391703
SRR3924590
MJIX00000000
E16
E16_Egypt_2010
PRJNA328823
SAMN05391704
SRR3924591
CP017332
303
303_USA_AL_1991
PRJNA328823
SAMN05391705
SRR3924592
MJIW0000000
FL1
FL1_USA_FL_2012
PRJNA328823
SAMN05391706
SRR3924593
CP017333
MA1
MA1_USA_MA_2011
PRJNA328823
SAMN05391707
SRR3924594
N/A
K27
K27_Kenya_2010
PRJNA328823
SAMN05391708
SRR3924596
CP017334
CO103
CO103_USA_CO_2013
PRJNA328823
SAMN05391709
SRR3924597
CP017335
GA3
GA3_USA_GA_2012
PRJNA328823
SAMN05391710
SRR3924598
CP017336
1005
1005_USA_NY_1999
PRJNA328823
SAMN05391711
SRR3924599
MJIV00000000
1006
1006_USA_NY_1999
PRJNA328823
SAMN05391712
SRR3924600
CP017337
987
987_USA_CA_1986
PRJNA328823
SAMN05391713
SRR3924601
N/A
1134
1134_USA_IN_1999
PRJNA328823
SAMN05391714
SRR3924602
CP017338
RI2
RI2_USA_RI_2011
PRJNA328823
SAMN05391715
SRR3924603
N/A
985
985_USA_SC_1988
PRJNA328823
SAMN05391716
SRR3924604
N/A
519
519_USA_CA_1995
PRJNA328823
SAMN05391717
SRR3924605
CP017339
237
237_USA_OH_1993
PRJNA328823
SAMN05391718
SRR3924607
N/A
682
682_Denmark_Unknown
PRJNA328823
SAMN05391719
SRR3924608
MJIU00000000
RI3
RI3_USA_RI_2007
PRJNA328823
SAMN05391720
SRR3924609
CP017340
1801
1801_USA_DC_2000
PRJNA328823
SAMN05391721
SRR3924610
CP017341
334
334_USA_NJ_1994
PRJNA328823
SAMN05391722
SRR3924611
N/A
3076
3076_USA_NH_2007
PRJNA328823
SAMN05391723
SRR3924612
N/A
300
300_USA_NY_1994
PRJNA328823
SAMN05391724
SRR3924613
N/A
709
709_USA_NY_1996
PRJNA328823
SAMN05391725
SRR3924614
N/A
O-360
O360_USA_ME_2007
PRJNA328823
SAMN05391726
SRR3924615
N/A
399
399_USA_PA_1994
PRJNA328823
SAMN05391727
SRR3924616
N/A
2P
2P_USA_RI_2007
PRJNA328823
SAMN05391728
SRR3924618
N/A
386
386_USA_TX_1994
PRJNA328823
SAMN05391729
SRR3924619
N/A
551
551_USA_WA_1974
PRJNA328823
SAMN05391730
SRR3924620
N/A
WI3
WI3_USA_WI_2012
PRJNA328823
SAMN05391731
SRR3924621
N/A
WI6
WI6_USA_WI_2012
PRJNA328823
SAMN05391732
SRR3924622
N/A
WV1
WV1_USA_WV_2011
PRJNA328823
SAMN05391733
SRR3924623
N/A
NE4
NE4_USA_NE_2014
PRJNA328823
SAMN05391734
SRR3924624
N/A
NE26
NE26_USA_NE_2014
PRJNA328823
SAMN05391735
SRR3924625
N/A
NM1
NM1_USA_NM_2010
PRJNA328823
SAMN05391736
SRR3924626
N/A
NM2
NM2_USA_NM_2010
PRJNA328823
SAMN05391737
SRR3924627
N/A
CO13
CO13_USA_CO_2013
PRJNA328823
SAMN05391738
SRR3924629
N/A
CO59
CO59_USA_CO_2013
PRJNA328823
SAMN05391739
SRR3924630
N/A
CO36
CO36_USA_CO_2013
PRJNA328823
SAMN05391740
SRR3924631
MJIT00000000
CO3
CO3_USA_CO_2014
PRJNA328823
SAMN05391741
SRR3924632
CP017342
CO58
CO58_USA_CO_2013
PRJNA328823
SAMN05391742
SRR3924633
N/A
CO26
CO26_USA_CO_2013
PRJNA328823
SAMN05391743
SRR3924634
N/A
M129
M129_USA_NC_1968
PRJNA328823
SAMN05391744
SRR3924635
CP017343
EPC205
EPC205_USA_UT_2012
PRJNA328823
SAMN05391745
SRR3924636
N/A
EPC83
EPC83_USA_UT_2011
PRJNA328823
SAMN05391746
SRR3924637
N/A
EPC67
EPC67_USA_TN_2012
PRJNA328823
SAMN05391747
SRR3924638
N/A
EPC181
EPC181_USA_TN_2012
PRJNA328823
SAMN05391748
SRR3924640
N/A
EPC104
EPC104_USA_UT_2012
PRJNA328823
SAMN05391749
SRR3924641
N/A
EPC37
EPC37_USA_UT_2011
PRJNA328823
SAMN05391750
SRR3924642
N/A
EPC122
EPC122_USA_IL_2012
PRJNA328823
SAMN05391751
SRR3924643
N/A
EPC164
EPC164_USA_TN_2012
PRJNA328823
SAMN05391752
SRR3924644
N/A
EPC44
EPC44_USA_UT_2011
PRJNA328823
SAMN05391753
SRR3924645
N/A
EPC230
EPC230_USA_TN_2012
PRJNA328823
SAMN05391754
SRR3924646
N/A
FH
1
Mycoplasma pneumoniae
FH
PRJNA224116
SAMN03284384
N/A
NZ_CP010546.1
309
1
DRS001148
PRJNA224116
SAMD00012611
DRS001148
NC_016807.1
M129
1
U00089
PRJNA57709
SAMN02603304
N/A
NC_000912.1
M129-B7
1
CP003913
PRJNA224116
SAMN02604130
N/A
NC_020076.2
1
Reference genome
figshare
Download
NCBI BioProject, BioSample and SRA accession IDs for newly sequenced genomes and references used in current study.
(DOCX)
S2 Table. NCBI BioProject, BioSample and SRA accession IDs for newly sequenced genomes and references used in current study.
https://doi.org/10.1371/journal.pone.0186030.s001
(DOCX)
1. Diaz MH, Desai HP, Morrison SS, Benitez AJ, Wolff BJ, Caravas J, et al. (2017) Comprehensive bioinformatics analysis of Mycoplasma pneumoniae genomes to investigate underlying population structure and type-specific determinants. PLoS ONE 12(4): e0174701. https://doi.org/10.1371/journal.pone.0174701 pmid:28410368
You have requested "on-the-fly" machine translation of selected content from our databases. This functionality is provided solely for your convenience and is in no way intended to replace human translation. Show full disclaimer
Neither ProQuest nor its licensors make any representations or warranties with respect to the translations. The translations are automatically generated "AS IS" and "AS AVAILABLE" and are not retained in our systems. PROQUEST AND ITS LICENSORS SPECIFICALLY DISCLAIM ANY AND ALL EXPRESS OR IMPLIED WARRANTIES, INCLUDING WITHOUT LIMITATION, ANY WARRANTIES FOR AVAILABILITY, ACCURACY, TIMELINESS, COMPLETENESS, NON-INFRINGMENT, MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. Your use of the translations is subject to all use restrictions contained in your Electronic Products License Agreement and by using the translation functionality you agree to forgo any and all claims against ProQuest or its licensors for your use of the translation functionality and any output derived there from. Hide full disclaimer
© 2017 Diaz et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.