Abstract

Summary: GeoDiver is an online web application for performing Differential Gene Expression Analysis (DGEA) and Generally Applicable Gene-set Enrichment Analysis (GAGE) on gene expression datasets from the publicly available Gene Expression Omnibus (GEO). The output produced includes numerous high quality interactive graphics, allowing users to easily explore and examine complex datasets instantly. Furthermore, the results produced can be reviewed at a later date and shared with collaborators. Availability: GeoDiver is freely available online at http://www.geodiver.co.uk . The source code is available on Github: https://github.com/GeoDiver/GeoDiver and a docker image is available for easy installation.

Details

Title
GeoDiver: Differential Gene Expression Analysis & Gene-Set Analysis For GEO Datasets
Author
Moghul, Ismail; Hewapathirana, Suresh; Nawaz, Nazrath; Rashid, Anisatu; Priebe, Marian; Vieira, Bruno; Smeraldi, Fabrizio; Bessant, Conrad
University/institution
Cold Spring Harbor Laboratory Press
Section
New Results
Publication year
2017
Publication date
May 17, 2017
Publisher
Cold Spring Harbor Laboratory Press
Source type
Working Paper
Language of publication
English
ProQuest document ID
2071167551
Copyright
�� 2017. This article is published under http://creativecommons.org/licenses/by/4.0/ (���the License���). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.