Abstract

Diarrhea remains one of the most common causes of deaths in children. Although many studies have investigated the prevalence of enteric pathogens around the globe some diarrheal episodes remain unexplained. It is possible that some yet-unidentified viral agents could be related to these cases of gastroenteritis. By using viral metagenomics techniques, we screened 251 fecal samples of children between 0.5 to 2.5-year-old with acute diarrhea not associated with common pathogens. These children live in rural areas and have different levels of contact with animals such as pigs, cows and bats. Here we report a complete genome of one mammalian orthoreovirus (MRV) type 3, denoted TO-151/BR, detected in a female child in the state of Tocantins (north of Brazil). Brazilian TO-151/BR strain was classified as MRV-3 based on S1 phylogeny and was closely related to porcine Asian strains. Phylogenetic analyses showed that other segments were more similar to MRV-3s of different geographic locations and hosts, including human and bats, highlighting genome reassortment and lack of host-specific barriers. This is the first report of MRV-3 in South America and a hypothesis of a silent long-term circulation of this virus in Brazil has been raised.

Details

Title
First identification of mammalian orthoreovirus type 3 by gut virome analysis in diarrheic child in Brazil
Author
Ulisses Alves Rosa 1 ; Geovani de Oliveira Ribeiro 1 ; Villanova, Fabiola 1 ; Luchs, Adriana 2 ; Flávio Augusto de Pádua Milagres 3 ; Shirley Vasconcelos Komninakis 4 ; Tahmasebi, Roozbeh 5 ; Márcia Cristina Alves Brito Sayão Lobato 6 ; Brustulin, Rafael 3 ; Rogério Togisaki das Chagas 6 ; Maria de Fátima Neves dos Santos Abrão 6 ; Cassia Vitória de Deus Alves Soares 6 ; Tinker, Rory J 7 ; Ramendra Pati Pandey 8 ; Raj, V Samuel 8 ; Ester Cerdeira Sabino 9 ; Deng, Xutao 10 ; Delwart, Eric 10 ; Antonio Charlys da Costa 11 ; Leal, Élcio 1 

 Institute of Biological Sciences, Federal University of Para, Para, Brazil 
 Enteric Disease Laboratory, Virology Center, Adolfo Lutz Institute, Sao Paulo, Brazil 
 Secretary of Health of Tocantins, Tocantins, Brazil; Institute of Biological Sciences, Federal University of Tocantins, Tocantins, Brazil; Public Health Laboratory of Tocantins State (LACEN/TO), Tocantins, Brazil 
 Postgraduate Program in Health Science, Faculty of Medicine of ABC, Santo André, Brazil; Retrovirology Laboratory, Federal University of São Paulo, São Paulo, Brazil 
 Instituto de Medicina Tropical, Universidade de São Paulo, São Paulo, Brazil; Polytechnic School of University of Sao Paulo, Sao Paulo, Brazil 
 Secretary of Health of Tocantins, Tocantins, Brazil; Public Health Laboratory of Tocantins State (LACEN/TO), Tocantins, Brazil 
 Instituto de Medicina Tropical, Universidade de São Paulo, São Paulo, Brazil; Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK 
 Centre for Drug Design Discovery and Development (C4D), SRM University, Delhi-NCR, Rajiv Gandhi Education City, Sonepat, Haryana, India 
 Instituto de Medicina Tropical, Universidade de São Paulo, São Paulo, Brazil; LIM/46, Faculdade de Medicina, Universidade de São Paulo, São Paulo, Brazil 
10  Vitalant Research Institute, San Francisco, CA, USA; Department Laboratory Medicine, University of California San Francisco, San Francisco, CA, USA 
11  Instituto de Medicina Tropical, Universidade de São Paulo, São Paulo, Brazil 
Pages
1-7
Publication year
2019
Publication date
Dec 2019
Publisher
Nature Publishing Group
e-ISSN
20452322
Source type
Scholarly Journal
Language of publication
English
ProQuest document ID
2323079742
Copyright
© 2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.