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1. Introduction
Breast cancer is a complex and heterogeneous disease caused by several factors, and its dissemination involves a succession of clinical and pathological stages beginning with carcinoma in situ, progressing to invasive lesion and culminating in metastatic disease [1, 2]. According to the World Cancer Report 2014 from the World Health Organization (WHO), breast cancer was the type with the highest incidence and highest mortality in the female population worldwide (1.7 million) in both developing and developed countries [3]. Early diagnosis and proper treatment are the main advantages of breast cancer screening tests. Basically, breast cancer diagnostic comprises four conventional techniques: histopathology, mammography, ultrasonography, and magnetic resonance imaging (MRI). However, in general these techniques have critical limitations related to efficacy and production of false positive or false negative results [4, 5].
Therefore, the increasing worldwide incidence of breast cancer and the absence of sufficient reliable, cost-effective, and high-throughput methods for detection requires a search for other diagnostic tools. The attenuated total reflection-Fourier transform infrared (ATR-FTIR) spectroscopy is a fast, nondestructive, noninvasive, label- and reagent-free, inexpensive, sensitive, and highly reproducible physicochemical tool for characterization of biological molecules in fluids. FTIR requires only a small amount of sample for analysis with easy and quick preparation if necessary, and it allows automated and repetitive analyses, leading to nonsubjective evaluation of the sample [4, 6, 7]. Furthermore, ATR, the experimental configuration for FTIR spectra acquisition utilized in this study, presents high signal-to-noise ratio (SNR), does not present unwanted spectral contributions, and enables a sample to be analyzed without further preparation simply by placing it in direct contact with a crystal with a refractive index higher than the sample [8–11].
FTIR can effectively provide information concerning the structure and chemical composition of biological samples at the molecular level and then the characterization of proteins, lipids, nucleic acids, and carbohydrates. FTIR is also sensitive to detect changes in molecular compositions according to diseased state, providing fingerprints of biological samples, like tissues, cells, and biological fluids. The generation and progression of malignancy at the molecular level in cells occur before morphological alterations in cancer. FTIR spectroscopy is capable to show changes in carcinogenesis-related vibrational modes to several human cancers [8, 12–14]. Specifically for breast cancer, FTIR spectroscopy has been used for many purposes [15–24], mainly for detection [4, 25–28]. Most FTIR spectroscopy studies in breast cancer used normal breast tissue and breast tumors [4, 29–31], breast cell lines [11, 32, 33], and blood of breast cancer patients [25, 27]. To our knowledge, there are no studies using ATR-FTIR spectroscopy for breast cancer diagnosis using saliva as the biological sample.
Saliva is a complex and dynamic biological fluid composed of 98% water and 2% of other important compounds, such as electrolytes, mucus, enzymes, proteins/peptides, nucleic acids, and hormones. Most of the organic compounds of saliva are produced in the salivary glands; however, some molecules originated from a diseased process may be transported from the blood to acinar cells via transcellular or paracellular fluxes into the acinar lumen [34–36]. Then, salivary biomarkers can be exploited for the early diagnosis of some systemic diseases [36–39]. Among the advantages, saliva may reflect several physiological states of the body; is simple, fast and safe to collect; is convenient to store; is noninvasive and, compared to blood, is painless to the patient, and requires less handling during diagnostic proceeding [38, 40, 41].
Here, we tested the hypothesis that specific salivary vibrational modes can be used to discriminate patients with breast cancer from benign patients and matched healthy controls, which may prove that salivary spectral biomarkers are suitable in diagnosing breast cancer. In this manner, the aim of the present study was to establish specific salivary vibrational modes, analyzed by ATR-FTIR spectroscopy, to detect breast cancer fingerprints that are suitable for diagnosis.
2. Materials and Methods
2.1. Ethical Aspects and Study Subjects
The study was conducted at the Clinics’ Hospital of the Federal University of Uberlandia (HC-UFU, Uberlandia, Minas Gerais, Brazil) under the approval of the UFU Research Ethics Committee (protocol number 064/2008) and based on the standards of the Declaration of Helsinki. All research were performed in accordance with the relevant guidelines and regulations. Written informed consent was obtained from all the participants of this study including controls and patients. The subjects were randomly selected from the population before performing routine breast cancer screening and/or surgery. Exclusion criteria were age below 18 years, primary tumor site other than the breast, and physical and/or mental inability to respond to the tools necessary for data collection. The study group included 30 subjects: 10 with confirmed breast cancer by clinical, histological, and pathologic examination; 10 with some benign breast disease, like fibroadenomas, atypical ductal hyperplasia, papilloma, or others; and 10 without pathological findings, the control group. In this study was used the tumor-node-metastasis (TNM) cancer classification, which is according to the American Joint Committee on Cancer (AJCC) and the International Union for Cancer Control (UICC). This classification evaluates the extent of the primary tumor (T), regional lymph nodes (N), and distant metastases (M) and provides staging based on T, N, and M [42].
2.2. Sample Collection and Preparation
For each participant, saliva samples were collected before surgery in Salivette® tubes (Sarstedt, Germany), consisting of a neutral cotton swab and a conical tube. The patient chewed the swab for three minutes, which was then returned to the tube that was covered with a lid. Then, the saliva from the swab was recovered by centrifugation for 2 minutes at 1000 ×
2.3. ATR-FTIR Spectroscopy
The spectra were measured in the 4000 to 400 cm−1 wavenumber region using a FTIR spectrometer VERTEX 70/70v (Bruker Corporation, Germany) coupled with Platinum Diamond ATR, which consists of a diamond disc as an internal reflection element. The lyophilized sample was placed on the ATR crystal, and then the spectrum was recorded. The spectrum of air was used as a background before each sample analysis. Background and sample spectra were taken in a room with a temperature around 21–23°C, at a spectral resolution of 4 cm−1, and to each measurement 32 scans were performed.
2.4. Spectral Data Preprocessing
The original FTIR spectra were normalized, and the baseline was corrected using OPUS software. This software was also used to calculate absorbance of area under spectral regions that correspond to specific saliva components, applying parameters already described [43]. Second differentiation spectra from the original were carried out using the Savitzky–Golay method in Origin 9.1 software in order to accentuate the bands, resolve overlapped bands, and increase the accuracy of analysis by revealing the genuine biochemical characteristics [25, 44]. In the smoothing pretreatment, the parameters of the Savitzky–Golay filter such as the polynomial order and points of window were chosen in order to find the relatively optimum smoothing effect. The parameters were set as 2 for polynomial order and 20 for points of window examined. The second derivative gives negative peaks (valleys) instead of bands from the original absorption spectrum. Therefore, the analy
2.5. Statistical Analysis
After the spectral preprocessing, the original and derivative values were used on the statistical analysis. First, values of absorbance at specific wavenumbers and spectral regions were submitted to the normality test. According to the results, parametric tests for variables with normal distribution or nonparametric tests for variables without normal distribution were performed. The specific tests applied are indicated on the legend of the figures. A confidence interval (CI) of 0.95 and an alpha level of 0.05 were assumed, so a
3. Results
3.1. Patient’s Characterization
Demography characteristics of the subjects are demonstrated in Table 1. The breast cancer, benign breast disease, and control patients consisted of 10 women, each one with a mean age ± standard deviation (SD) of 53.3 ± 11.2, 41.5 ± 4.2, and 43.2 ± 16.0 years, respectively. The smoking and alcoholism patterns were similar (
Table 1
Demography characteristics of breast cancer, benign breast disease, and control patients.
Characteristics | Breast cancer n = 10 | Benign n = 10 | Control n = 10 |
Age (years) | |||
Range | 42.0–75.0 | 33.0–49.0 | 22.0–63.0 |
Average ± SD | 53.3 ± 11.2 | 41.5 ± 4.2 | 43.2 ± 16.0 |
History of smoking (%) | 30 | 40 | 30 |
Family history of breast cancer (%) | 40 | 0 | 0 |
Table 2
Clinical, hormonal, diagnostic, and therapy characteristics of breast cancer patients.
Variable | Patients (n = 10) | |
N | % | |
Histological subtype | ||
Invasive ductal carcinoma | 6 | 60 |
In situ ductal carcinoma | 3 | 30 |
Mucinous carcinoma | 1 | 10 |
|
||
Histological grade | ||
G2 | 5 | 50 |
G3 | 2 | 20 |
NR | 3 | 30 |
|
||
Primary tumor | ||
ptx | 1 | 10 |
pTis | 3 | 30 |
pT1 | 4 | 40 |
pT2 | 2 | 20 |
|
||
Regional lymph nodes | ||
pNX | 2 | 20 |
pN0 | 5 | 50 |
pN1 | 1 | 10 |
pN2 | 1 | 10 |
NR | 1 | 10 |
|
||
Distant metastases | ||
pM0 | 7 | 70 |
NR | 3 | 30 |
|
||
TNM staging | ||
0 | 2 | 20 |
I | 1 | 10 |
II | 2 | 20 |
NR | 5 | 50 |
|
||
Status ER | ||
Positive | 8 | 80 |
NR | 2 | 20 |
|
||
Status PR | ||
Positive | 8 | 80 |
NR | 2 | 20 |
|
||
Status HER2 | ||
Positive | 2 | 20 |
Negative | 6 | 60 |
NR | 2 | 20 |
|
||
p53 | ||
Positive | 8 | 80 |
NR | 2 | 20 |
|
||
Ki67 | ||
≤14% | 5 | 50 |
>14% | 3 | 30 |
NR | 2 | 20 |
|
||
Molecular phenotype | ||
Luminal A | 4 | 40 |
Luminal B | 4 | 40 |
NR | 2 | 20 |
|
||
Therapy | ||
Surgery (S) | 1 | 10 |
S + radiotherapy (RT) | 1 | 10 |
S + RT + hormone therapy (HT) | 3 | 30 |
S + RT + HT + chemotherapy (CT) | 5 | 50 |
G1, grade 1; G2, grade 2; G3, grade 3; NR, not reported; ER, estrogen receptor; PR, progesterone receptor; HER2, human epidermal growth factor receptor 2; p53, tumor protein p53; ki67, antigen ki67.
3.2. FTIR Analysis of Saliva Spectra between Breast Cancer, Benign, and Control Patients
The averages of the infrared original spectrum of whole saliva of breast cancer, benign, and control patients are represented in Figure 1 with a superposition of several salivary components as proteins, nucleic acids, lipids, and carbohydrates. The protein content is mainly attributed to wavenumbers at 1636 cm−1 and 1549 cm−1 that corresponds to amide I and amide II, respectively. CH3 asymmetric bending and νs (COO−) are related with wavenumbers 1447 cm−1 and 1404 cm−1, respectively. The wavenumbers 1350 cm−1 and 1244 cm−1 indicate amide III. The 1045 cm−1 and 995 cm−1 bands indicate νs (PO2−) and C-O ribose/C-C, respectively. A resume of the assignments of main vibrational modes and their respective salivary component is shown in Table 3.
[figure omitted; refer to PDF]
Table 3
Assignments of main wavenumbers indicated in the average original saliva ATR-FTIR spectra of Figure 1 and assignments based on different references [45–48].
Peak (cm−1) | Proposed vibrational mode | Molecular source |
1636 | Amide I [ν (C=O), ν (C–N), δ (N–H)] | Protein |
1549 | Amide II [ν (N–H), ν (C–N)] | Protein |
1447 | CH3 asymmetric bending [δas (CH3)] | Protein (methyl groups) |
1404 | COO− symmetric stretching [νs (COO−)] | Lipid (fatty acids)/Protein (amino acids) |
1350 | Amide III [ν (C–N)] | Protein |
1244 | ||
1045 | C-O stretching, C-O bending of the C-OH groups [ν (C-O), δ (C-O)] | Carbohydrates (glycogen glucose, fructose) |
995 | C-O ribose/C-C; RNA uracil ring stretching | Nucleic acid (RNA) |
ν = stretching vibrations, δ = bending vibrations, s = symmetric vibrations, as = asymmetric vibrations.
The second-derivative infrared spectra of whole saliva of breast cancer, benign, and control patients were analyzed in detail to identify specific spectral components. The averages of the second-derivative infrared spectra of saliva for each group of patients are presented in Figure 2. The major wavenumbers detected in whole saliva were found at ∼2964, 2929, 2875, 2659, 2358, 2322, and 2285 (3000 cm−1—2200 cm−1 region, Figure 2(a)), 2059, 1635, 1544, 1450, 1404, and 1313 (2200 cm−1—1300 cm−1 region, Figure 2(b)), and 1242, 1159, 1120, 1041, 987, 877, and 613 cm−1 (1300 cm−1—600 cm−1 region, Figure 2(c)). The vibrational modes and related molecular sources of these wavenumbers are presented in Table 4.
[figures omitted; refer to PDF]
Table 4
Assignments of FTIR peaks of the average second-derivative spectra and assignments based on different references [45–51].
2nd derivative peak (cm−1) | Proposed vibrational mode | Molecular source |
|
||
2964 | CH3 asymmetric stretching (νas (CH3)) | Lipid |
2929 | CH2 asymmetric stretching (νas (CH2)) | Nucleic acid/Lipid |
2875 | CH3 symmetric stretching (νs (CH3)) | Lipid |
2659 | Unassigned band | |
2358 | O=C=O stretching | Carbon dioxide |
2322 | Unassigned band | |
2285 | N=C=O stretching | Nitrile |
2059 | C-N stretching of thiocyanate anions (SCN−) | Thiocyanate |
1635 | Amide I (β-sheet structure) | Protein |
1544 | Amide II | Protein |
1450 | CH2 symmetric bending (δs (CH2)) |
Lipid and protein |
1404 | CH3 symmetric bending (δs (CH3)) | Protein (methyl groups) |
1313 | Amide III | Protein |
1242 | Amide III |
Protein |
1159 | C-O stretching (ν (C-O)) |
Protein/CarbohydrateLipid |
1120 | Phosphorylated saccharide residue |
Carbohydrate |
1041 | PO2− symmetric stretching (νs (PO2−)) | Nucleic acid (RNA/DNA) and glycogen |
987 | C=C bending | Monosaccharides and polysaccharides |
877 | C 3’ endo/anti A-form helix | Nucleic acid |
613 | C-H out-of-plane bending | Cell membranes |
ν = stretching vibrations, δ = bending vibrations, s = symmetric vibrations, as = asymmetric vibrations.
3.3. Prevalidation as Diagnostic Potential by ROC Curve and Pearson Correlation
Considering that sensitivity and specificity are basic characteristics to determine the accuracy of a diagnostic test, ROC analysis were used to ascertain the potential diagnosis of each vibrational modes of the original and second-derivative spectrum. A resume of statistical analysis (mean ± SD; t-test; ROC curve
[figures omitted; refer to PDF]
Considering the difference of the salivary original spectra in the region between 1433 cm−1 and 1302.9 cm−1, we performed quantitative analysis in breast cancer, benign, and control patients (Figure 4). The 1433–1302.9 cm−1 salivary wavenumber range was higher in breast cancer than in benign patients (
[figures omitted; refer to PDF]
4. Discussion
Our present data support our hypothesis that ATR-FTIR vibrational modes of saliva may discriminate breast cancer from benign and matched-control patients. Here, we have identified new salivary ATR-FTIR spectral biomarkers for breast cancer screening. The 1041 cm−1 salivary vibrational mode in the second-derivative spectra and the 1433–1302.9 cm−1 wavenumber region in the original spectra could potentially be used as salivary biomarkers to discriminate breast cancer from benign and matched-control patients with very good accuracy.
Our most potential spectral biomarker at 1433–1302.9 cm−1 was able to discriminate human BC from controls with sensitivity and specificity of 90% and 80%, respectively. Besides, it was able to differentiate BC from benign disease with sensitivity and specificity of 90% and 70%, respectively. Considering that mammography, ultrasound, and MRI, the conventional techniques used in clinical practice, show sensitivities of 67.8%, 83%, and 94.4% and specificities of 75%, 34%, and 26.4%, respectively [52], we believe that our results could improve the accuracy obtained for breast cancer diagnosis. However, in order to perform the conventional diagnosis, high-end equipments and facilities are required with significant clinical costs. Furthermore, circulating biomarkers have also been used as indicators of breast cancer; however, none of them has reached adequate sensitivity and specificity, limiting their clinical applicability in breast cancer diagnosis [53]. Infrared spectroscopy allows analyzing the entire biochemical signature (including proteins, lipids, nucleic acids, and carbohydrates) of a biological sample rather than focusing on a single specific protein as a biomarker [25]. Therefore, the salivary ATR-FTIR spectra are highly desirable due to their speed, convenience, and cost effectiveness, strongly suggesting this diagnostic platform for breast cancer screening.
ROC curve analysis is widely considered to be the most objective and statistically valid method for biomarker performance evaluation. In the current study, the ROC curve analysis showed reasonable accuracy for the salivary 1041 cm−1 level of second-derivative ATR-FTIR spectra and good accuracy for the 1433–1302.9 band area. The salivary 1041 cm−1 level of second-derivative ATR-FTIR spectra was increased in breast cancer patients compared with benign patients. Surprisingly, despite the absence of significant difference between breast cancer patients and controls, this spectral biomarker candidate exhibited significant diagnostic value with an AUC of 0.7700 comparing breast cancer patients than controls. Additionally, it also exhibited significant diagnostic value with similar AUC to compare breast cancer and benign patients. Therefore, this salivary spectral ATR-FTIR biomarker is a compatible complementary alternative to improve diagnosis of breast cancer. The 1433–1302.9 band area was elevated in saliva of breast cancer patients as compared with control and benign patients, and this band area showed a high sensitivity and specificity to discriminate breast cancer from both controls and benign patients, being prevalidated as a salivary ATR-FTIR biomarker of breast cancer by ROC curve analysis. The discriminatory power of this biomarker candidate for breast cancer reached 90% of specificity and 80% of sensitivity from matched controls and 90% of specificity and 70% of sensitivity from benign patients. As to potential for clinic application, these data strongly indicate that the salivary band area of the 1433–1302.9 cm−1 region had a high capacity do discriminate patients with breast cancer from healthy and benign patients. It is important to note that the salivary band area of the 1433–1302.9 cm−1 region was similar between benign and control, which is in concordance with blood test analysis [25].
It is known that increase in absorbance in each specific spectral vibrational mode represents increase in the presence of a specific biomolecule [44]. The increase in absorbance levels of breast cancer patients at the 1041 cm−1 vibrational mode is due to increased levels of PO2− symmetric stretching [νs (PO2−)], which is present in nucleic acids and glycogen. Previous studies on cancer cells and tissues using FTIR spectroscopy also reported many changes in the phosphate region, which corresponds mainly to nucleic acids and carbohydrates [25]. The increased level in the 1433–1302.9 cm−1 region is due to increased levels of COO− symmetric stretching [νs (COO−)], which is present in proteins and lipids.
Considering the higher expression of PO2 symmetric stretching (νs (PO2−)) and COO− symmetric stretching (νs (COO−)) in saliva of breast cancer patients, we suggest that these molecules are originated from blood and access saliva by passive diffusion of lipophilic molecules (e.g., steroid hormones) or active transport of proteins via ligand-receptor binding [35]. Hence, saliva may present biomarkers that reflect the pathophysiological state of the body, such as, breast cancer. There are numerous putative salivary molecular biomarkers that are probably altered in the presence of breast cancer. Higher levels of some proteins [54–56], carbohydrates [52], and nucleic acids [47] have already been found in the saliva of breast cancer patients in comparison with normal controls, which corroborates with the results found in this study. In general, these biomarkers were evaluated by proteomic, immunological, and biomolecular techniques.
Higher levels of many proteins were observed in the saliva of breast cancer patients, such as (a) vascular endothelial growth factor (VEGF) and epidermal growth factor (EGF), which are potent angiogenic factors; (b) carcinoembryonic antigen (CEA) that is a glycoprotein and well-established serum tumor marker for breast cancer [54]; (c) soluble form of HER2 protein, that is a receptor tyrosine kinase, product of c-erbB-2 oncogene, and marker of poor prognosis [55]; and (d) p53 that is a tumor suppressor protein product of oncogene p53, it regulates target genes that induce cell cycle arrest, apoptosis, senescence, DNA repair, or changes in metabolism, and it is the indicator of poor clinical outcome [56].
One limitation of our study is the relatively small number of patients and the need for larger multicenter studies to confirm our results. Another limitation of this study is the lack of information about the specificity of this salivary ATR-FTIR spectral biomarker in breast cancer, especially considering that other cancers may also exhibit similar changes. Therefore, further studies are needed to evaluate the diagnostic performance of these spectral ATR-FTIR biomarkers of saliva in other cancers.
5. Conclusions
In conclusion, the present study showed for the first time that ATR-FTIR spectroscopy can be used in saliva samples to discriminate breast cancer patients than benign patients and healthy subjects. It was found absorbance levels significantly higher in saliva of breast cancer patients compared with benign patients at wavenumber 1041 cm−1 and the ROC curve analysis of this peak showed a reasonable accuracy to discriminate breast cancer from benign and control patients. In addition, we demonstrated that the 1433–1302.9 cm−1 wavenumber region was elevated in saliva of breast cancer patients as compared with control and benign patients. Our study highlighted this salivary spectral region as a biomarker with high accuracy to differentiate breast cancer from both control and benign patients. In summary, these innovative results suggest that salivary analysis by ATR-FTIR spectroscopy is a promising tool for breast cancer diagnosis.
Disclosure
The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript; or in the decision to publish the results. The results presented in this manuscript are part of one patent application: Maia, Y. C. P.; Ferreira, I. C. C.; Goulart, L. R.; Silva, A. T. F.; Santos, L. L. D.; Aguiar, E. M. G.; Araujo, T. G.; Sousa, L. C.; and Silva, R. S. “Método para detecção de câncer de mama baseado em componentes salivares”, 2018. Registration number: BR10201801530. Date of deposit: 07/26/2018.”
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Abstract
Saliva biomarkers using reagent-free biophotonic technology have not been investigated as a strategy for early detection of breast cancer (BC). The attenuated total reflection-Fourier transform infrared (ATR-FTIR) spectroscopy has been proposed as a promising tool for disease diagnosis. However, its utilization in cancer is still incipient, and currently saliva has not been used for BC screening. We have applied ATR-FTIR onto saliva from patients with breast cancer, benign breast disease, and healthy matched controls to investigate its potential use in BC diagnosis. Several salivary vibrational modes have been identified in original and second-derivative spectra. The absorbance levels at wavenumber 1041 cm−1 were significantly higher (
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1 Laboratory of Nanobiotechnology, Institute of Biotechnology, Federal University of Uberlandia, Uberlandia 38405-302, Brazil
2 Department of Physiology, Institute of Biomedical Sciences, Federal University of Uberlandia, Uberlandia 38405-302, Brazil
3 Obstetric Division, University Hospital, Federal University of Uberlandia, Uberlandia 38405-320, Brazil
4 Laboratory of Nanobiotechnology, Institute of Biotechnology, Federal University of Uberlandia, Uberlandia 38405-302, Brazil; School of Medicine, Federal University of Uberlandia, Uberlandia 38405-320, Brazil