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Abstract
Drug target Mendelian randomization (MR) studies use DNA sequence variants in or near a gene encoding a drug target, that alter the target’s expression or function, as a tool to anticipate the effect of drug action on the same target. Here we apply MR to prioritize drug targets for their causal relevance for coronary heart disease (CHD). The targets are further prioritized using independent replication, co-localization, protein expression profiles and data from the British National Formulary and clinicaltrials.gov. Out of the 341 drug targets identified through their association with blood lipids (HDL-C, LDL-C and triglycerides), we robustly prioritize 30 targets that might elicit beneficial effects in the prevention or treatment of CHD, including NPC1L1 and PCSK9, the targets of drugs used in CHD prevention. We discuss how this approach can be generalized to other targets, disease biomarkers and endpoints to help prioritize and validate targets during the drug development process.
Drug target Mendelian randomization (MR) uses genetic variation in or near a gene encoding a drug target to anticipate the effect of drug action on the same target. Using drug target MR, the authors prioritized 30 targets that might elicit beneficial effects in the prevention or treatment of coronary heart disease.
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1 University College London, Institute of Cardiovascular Science, Faculty of Population Health, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201)
2 University College London, Institute of Cardiovascular Science, Faculty of Population Health, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201); UCL British Heart Foundation Research Accelerator, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201)
3 University College London, Institute of Cardiovascular Science, Faculty of Population Health, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201); Mahidol University, Department of Tropical Hygiene, Faculty of Tropical Medicine, Bangkok, Thailand (GRID:grid.10223.32) (ISNI:0000 0004 1937 0490); Mahidol University, Integrative Computational BioScience (ICBS) Center, Bangkok, Thailand (GRID:grid.10223.32) (ISNI:0000 0004 1937 0490)
4 University College London, Institute of Cardiovascular Science, Faculty of Population Health, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201); Brunel University London, Department of Life Sciences, College of Health, Medicine, and Life Sciences, Uxbridge, UK (GRID:grid.7728.a) (ISNI:0000 0001 0724 6933)
5 University College London, Institute of Cardiovascular Science, Faculty of Population Health, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201); University College London, MRC Unit for Lifelong Health and Ageing, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201)
6 University College London, Primary Care and Population Health, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201)
7 University College London, MRC Unit for Lifelong Health and Ageing, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201)
8 University College London, Institute of Health Informatics, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201)
9 University College London, Department of Epidemiology and Public Health, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201)
10 University of Edinburgh, Usher Institute, Edinburgh, UK (GRID:grid.4305.2) (ISNI:0000 0004 1936 7988)
11 University College London, Institute of Cardiovascular Science, Faculty of Population Health, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201); UCL British Heart Foundation Research Accelerator, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201); University College London, MRC Unit for Lifelong Health and Ageing, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201)
12 MRC Integrative Epidemiology Unit at the University of Bristol, Bristol, UK (GRID:grid.5337.2) (ISNI:0000 0004 1936 7603); University of Bristol, Population Health, Bristol Medical School, Bristol, UK (GRID:grid.5337.2) (ISNI:0000 0004 1936 7603); University Hospitals Bristol National Health Service Foundation Trust and University of Bristol, Bristol NIHR Bristol Biomedical Research Centre, Bristol, UK (GRID:grid.5337.2) (ISNI:0000 0004 1936 7603)
13 Wellcome Genome Campus, Hinxton, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge, UK (GRID:grid.225360.0) (ISNI:0000 0000 9709 7726)
14 University College London, Institute of Cardiovascular Science, Faculty of Population Health, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201); UCL British Heart Foundation Research Accelerator, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201); University Medical Center Utrecht, Heidelberglaan 100, Department of Cardiology, Division Heart and Lungs, Utrecht, The Netherlands (GRID:grid.7692.a) (ISNI:0000000090126352)