Abstract
For decades, marine plankton have been investigated for their capacity to modulate biogeochemical cycles and provide fishery resources. Between the sunlit (epipelagic) layer and the deep dark waters, lies a vast and heterogeneous part of the ocean: the mesopelagic zone. How plankton composition is shaped by environment has been well-explored in the epipelagic but much less in the mesopelagic ocean. Here, we conducted comparative analyses of trans-kingdom community assemblages thriving in the mesopelagic oxygen minimum zone (OMZ), mesopelagic oxic, and their epipelagic counterparts. We identified nine distinct types of intermediate water masses that correlate with variation in mesopelagic community composition. Furthermore, oxygen, NO3− and particle flux together appeared as the main drivers governing these communities. Novel taxonomic signatures emerged from OMZ while a global co-occurrence network analysis showed that about 70% of the abundance of mesopelagic plankton groups is organized into three community modules. One module gathers prokaryotes, pico-eukaryotes and Nucleo-Cytoplasmic Large DNA Viruses (NCLDV) from oxic regions, and the two other modules are enriched in OMZ prokaryotes and OMZ pico-eukaryotes, respectively. We hypothesize that OMZ conditions led to a diversification of ecological niches, and thus communities, due to selective pressure from limited resources. Our study further clarifies the interplay between environmental factors in the mesopelagic oxic and OMZ, and the compositional features of communities.
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; Budinich, Marko 2 ; Murillo, Alejandro A. 3 ; Brandão, Manoela C. 4
; Pierella Karlusich, Juan J. 5
; Soviadan, Yawouvi Dodji 4 ; Gregory, Ann C. 6 ; Endo, Hisashi 7
; Kokoszka, Florian 8 ; Vik, Dean 6 ; Henry, Nicolas 9
; Frémont, Paul 10
; Labadie, Karine 10 ; Zayed, Ahmed A. 6
; Dimier, Céline 4 ; Picheral, Marc 11 ; Searson, Sarah 4 ; Poulain, Julie 1 ; Kandels, Stefanie 12 ; Pesant, Stéphane 13 ; Karsenti, Eric 14 ; Acinas, Silvia G. 15 ; Boss, Emmanuel 16 ; Cochrane, Guy 3 ; de Vargas, Colomban 17 ; Gorsky, Gabriel 18 ; Grimsley, Nigel 19 ; Guidi, Lionel 20 ; Hingamp, Pascal 21 ; Karp-Boss, Lee 16 ; Not, Fabrice 22 ; Raes, Jeroen 23 ; Sardet, Christian 24 ; Speich, Sabrina 25 ; Bork, Peer 26
; Bowler, Chris 27
; Eveillard, Damien 28
; Gehlen, Marion 29
; Iudicone, Daniele 30
; Lombard, Fabien 31
; Ogata, Hiroyuki 7
; Stemmann, Lars 32
; Sullivan, Matthew B. 33
; Sunagawa, Shinichi 34
; Wincker, Patrick 1
; Chaffron, Samuel 35
; Jaillon, Olivier 1
1 Université Evry, Université Paris-Saclay, Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, Commissariat à l’Energie Atomique (CEA), CNRS, Evry, France (GRID:grid.8390.2) (ISNI:0000 0001 2180 5818); Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, Paris, France (GRID:grid.8390.2)
2 Sorbonne Université, CNRS, Station Biologique de Roscoff, AD2M, UMR 7144, Roscoff, France (GRID:grid.8390.2); Nantes Université, École Centrale Nantes, CNRS, LS2N, UMR 6004, Nantes, France (GRID:grid.503212.7) (ISNI:0000 0000 9563 6044)
3 European Molecular Biology Laboratory, Meyerhofstr. 1, Structural and Computational Biology, Heidelberg, Germany (GRID:grid.4709.a) (ISNI:0000 0004 0495 846X)
4 Sorbonne Université, CNRS, Institut de la Mer de Villefranche sur mer, Laboratoire d’Océanographie de Villefranche, Villefranche-sur-Mer, France (GRID:grid.499565.2) (ISNI:0000 0004 0366 8890)
5 Université PSL, Institut de Biologie de l’ENS (IBENS), Département de biologie, Ecole normale supérieure, CNRS, INSERM, Paris, France (GRID:grid.440907.e) (ISNI:0000 0004 1784 3645)
6 The Ohio State University, Department of Microbiology, Columbus, USA (GRID:grid.261331.4) (ISNI:0000 0001 2285 7943)
7 Institute for Chemical Research Kyoto University, Gokasho, Uji, Bioinformatics Center, Kyoto, Japan (GRID:grid.258799.8) (ISNI:0000 0004 0372 2033)
8 Université PSL, Institut de Biologie de l’ENS (IBENS), Département de biologie, Ecole normale supérieure, CNRS, INSERM, Paris, France (GRID:grid.440907.e) (ISNI:0000 0004 1784 3645); Stazione Zoologica Anton Dohrn, Villa Comunale, Naples, Italy (GRID:grid.6401.3) (ISNI:0000 0004 1758 0806)
9 Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, Paris, France (GRID:grid.261331.4); Sorbonne Université, CNRS, Station Biologique de Roscoff, AD2M, UMR 7144, Roscoff, France (GRID:grid.261331.4)
10 Université Evry, Université Paris-Saclay, Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, Commissariat à l’Energie Atomique (CEA), CNRS, Evry, France (GRID:grid.8390.2) (ISNI:0000 0001 2180 5818)
11 Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, Paris, France (GRID:grid.499565.2); Sorbonne Université, CNRS, Institut de la Mer de Villefranche sur mer, Laboratoire d’Océanographie de Villefranche, Villefranche-sur-Mer, France (GRID:grid.499565.2) (ISNI:0000 0004 0366 8890)
12 European Molecular Biology Laboratory, Meyerhofstr. 1, Structural and Computational Biology, Heidelberg, Germany (GRID:grid.4709.a) (ISNI:0000 0004 0495 846X); Directors’ Research European Molecular Biology Laboratory Meyerhofstr. 1, Heidelberg, Germany (GRID:grid.4709.a) (ISNI:0000 0004 0495 846X)
13 University of Bremen, MARUM, Center for Marine Environmental Sciences, Bremen, Germany (GRID:grid.7704.4) (ISNI:0000 0001 2297 4381); University of Bremen, PANGAEA, Data Publisher for Earth and Environmental Science, Bremen, Germany (GRID:grid.7704.4) (ISNI:0000 0001 2297 4381)
14 Université PSL, Institut de Biologie de l’ENS (IBENS), Département de biologie, Ecole normale supérieure, CNRS, INSERM, Paris, France (GRID:grid.440907.e) (ISNI:0000 0004 1784 3645); Directors’ Research European Molecular Biology Laboratory Meyerhofstr. 1, Heidelberg, Germany (GRID:grid.4709.a) (ISNI:0000 0004 0495 846X)
15 Department of Marine Biology and Oceanography, Institut de Ciències del Mar (ICM), CSIC, Barcelona, Spain (GRID:grid.418218.6) (ISNI:0000 0004 1793 765X)
16 University of Maine, School of Marine Sciences, Orono, USA (GRID:grid.21106.34) (ISNI:0000 0001 2182 0794)
17 Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, Paris, France (GRID:grid.4709.a); Sorbonne Université, CNRS, Station Biologique de Roscoff, AD2M, UMR 7144, Roscoff, France (GRID:grid.4709.a)
18 Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, Paris, France (GRID:grid.4709.a)
19 CNRS, UMR 7232, BIOM, Avenue Pierre Fabre, Banyuls‐sur‐Mer, France (GRID:grid.463721.5) (ISNI:0000 0004 0597 2554)
20 Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, Paris, France (GRID:grid.463721.5); Sorbonne Université, CNRS, Institut de la Mer de Villefranche sur mer, Laboratoire d’Océanographie de Villefranche, Villefranche-sur-Mer, France (GRID:grid.499565.2) (ISNI:0000 0004 0366 8890)
21 Aix Marseille Univ., Université de Toulon, CNRS, IRD, MIO UM 110, Marseille, France (GRID:grid.499565.2)
22 Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, Paris, France (GRID:grid.21106.34)
23 Rega Institute, Department of Microbiology and Immunology, Leuven, Belgium (GRID:grid.5596.f) (ISNI:0000 0001 0668 7884)
24 Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, Paris, France (GRID:grid.5596.f)
25 Laboratoire de Physique des Océans, UBO‐IUEM, Place Copernic, Plouzané, France (GRID:grid.5596.f)
26 European Molecular Biology Laboratory, Meyerhofstr. 1, Structural and Computational Biology, Heidelberg, Germany (GRID:grid.4709.a) (ISNI:0000 0004 0495 846X); University of Würzburg, Department of Bioinformatics, Biocenter, Würzburg, Germany (GRID:grid.8379.5) (ISNI:0000 0001 1958 8658)
27 Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, Paris, France (GRID:grid.8379.5); Université PSL, Institut de Biologie de l’ENS (IBENS), Département de biologie, Ecole normale supérieure, CNRS, INSERM, Paris, France (GRID:grid.440907.e) (ISNI:0000 0004 1784 3645)
28 Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, Paris, France (GRID:grid.440907.e); Nantes Université, École Centrale Nantes, CNRS, LS2N, UMR 6004, Nantes, France (GRID:grid.503212.7) (ISNI:0000 0000 9563 6044)
29 Université Paris-Saclay, Institut Pierre Simon Laplace, Laboratoire des Sciences du Climat et de l’Environnement, CEA, CNRS, Gif-sur-Yvette cedex, France (GRID:grid.460789.4) (ISNI:0000 0004 4910 6535)
30 Stazione Zoologica Anton Dohrn, Villa Comunale, Naples, Italy (GRID:grid.6401.3) (ISNI:0000 0004 1758 0806)
31 Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, Paris, France (GRID:grid.6401.3); Sorbonne Université, CNRS, Institut de la Mer de Villefranche sur mer, Laboratoire d’Océanographie de Villefranche, Villefranche-sur-Mer, France (GRID:grid.499565.2) (ISNI:0000 0004 0366 8890)
32 Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, Paris, France (GRID:grid.258799.8); Sorbonne Université, CNRS, Institut de la Mer de Villefranche sur mer, Laboratoire d’Océanographie de Villefranche, Villefranche-sur-Mer, France (GRID:grid.499565.2) (ISNI:0000 0004 0366 8890)
33 The Ohio State University, Department of Microbiology, Columbus, USA (GRID:grid.261331.4) (ISNI:0000 0001 2285 7943); The Ohio State University, Department of Civil, Environmental and Geodetic Engineering, Columbus, USA (GRID:grid.261331.4) (ISNI:0000 0001 2285 7943)
34 European Molecular Biology Laboratory, Meyerhofstr. 1, Structural and Computational Biology, Heidelberg, Germany (GRID:grid.4709.a) (ISNI:0000 0004 0495 846X); Department of Biology; Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zurich, Zurich, Switzerland (GRID:grid.5801.c) (ISNI:0000 0001 2156 2780)
35 Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, Paris, France (GRID:grid.8390.2); Nantes Université, École Centrale Nantes, CNRS, LS2N, UMR 6004, Nantes, France (GRID:grid.503212.7) (ISNI:0000 0000 9563 6044)





