Abstract
Background
People with autoimmune diseases are prone to cancer, and there is a close relationship between rheumatoid arthritis (RA) and acute myeloid leukemia (AML). The bone marrow (BM) is affected throughout the course of RA, with a variety of hematologic involvement. Hopes are pinned on rheumatoid arthritis research to obtain BM biomarkers for AML.
Methods
Synovial transcriptome sequencing data for RA and osteoarthritis (OA), and single-cell sequencing data for RA and controls were obtained from the GEO database.Bone marrow sequencing data for AML patients and normal subjects were obtained from the UCSC Xena database. The final immune heterogeneity characteristics of RA were determined through ssGSEA analysis, gene differential expression analysis, fuzzy c-means clustering algorithm, and XGboost algorithm. Random Ferns classifiers (RFs) are used to identify new bone marrow markers for AML.
Results
SELL, PTPRC, IL7R, CCR7, and KLRB1 were able to distinguish leukemia cells from normal cells well, with AUC values higher than 0.970.
Conclusion
Genes characterizing the immune heterogeneity of RA are associated with AML, and KLRBA may be a potential target for AML treatment.
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Details
1 Shandong Second Medical University, School of Public Health, Weifang, People’s Republic of China
2 Qingdao Municipal Hospital (Group), Qingdao, People’s Republic of China (GRID:grid.415468.a) (ISNI:0000 0004 1761 4893)
3 Shandong Second Medical University, Computer Teaching and Research Office, Weifang, People’s Republic of China (GRID:grid.415468.a)
4 Shandong Second Medical University, School of Public Health, Weifang, People’s Republic of China (GRID:grid.415468.a)