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© 2024 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.

Abstract

Poultry production is essential to the economy and livelihood of many rural Zambian households. However, the industry is threatened by infectious diseases, particularly Newcastle disease virus (NDV) infection. Therefore, this study employed next-generation sequencing to characterise six NDV isolates from poultry in Zambia’s live bird markets (LBMs) and wild waterfowl. Four NDV isolates were detected from 410 faecal samples collected from chickens in LBMs in Lusaka and two from 2851 wild birds from Lochinvar National Park. Phylogenetic analysis revealed that the four NDVs from LBM clustered in genotype VII and sub-genotype VII.2 were closely related to viruses previously isolated in Zambia and other Southern African countries, suggesting possible local and regional transboundary circulation of the virus. In contrast, the two isolates from wild birds belonged to class I viruses, genotype 1, and were closely related to isolates from Europe and Asia, suggesting the possible introduction of these viruses from Eurasia, likely through wild bird migration. The fusion gene cleavage site motif for all LBM-associated isolates was 112RRQKR|F117, indicating that the viruses are virulent, while the isolates from wild waterfowl had the typical 112ERQER|L117 avirulent motif. This study demonstrates the circulation of virulent NDV strains in LBMs and has, for the first time, characterised NDV from wild birds in Zambia. The study further provides the first whole genomes of NDV sub-genotype VII.2 and genotype 1 from Zambia and stresses the importance of surveillance and molecular analysis for monitoring the circulation of NDV genotypes and viral evolution.

Details

Title
Phylogenetic Analysis of Newcastle Disease Virus Isolated from Poultry in Live Bird Markets and Wild Waterfowl in Zambia
Author
Kalonda, Annie 1   VIAFID ORCID Logo  ; Saasa, Ngonda 2 ; Kajihara, Masahiro 3   VIAFID ORCID Logo  ; Naganori Nao 4 ; Moonga, Ladslav 5 ; Ndebe, Joseph 2 ; Mori-Kajihara, Akina 6 ; Mukubesa, Andrew Nalishuwa 2 ; Sakoda, Yoshihiro 7   VIAFID ORCID Logo  ; Sawa, Hirofumi 8 ; Takada, Ayato 9   VIAFID ORCID Logo  ; Simulundu, Edgar 10   VIAFID ORCID Logo 

 Department of Biomedical Sciences, School of Health Sciences, University of Zambia, Lusaka 10101, Zambia; Department of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia; [email protected] (N.S.); [email protected] (J.N.); [email protected] (A.N.M.); [email protected] (H.S.); [email protected] (A.T.); Africa Centre of Excellence for Infectious Diseases of Humans and Animals, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia 
 Department of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia; [email protected] (N.S.); [email protected] (J.N.); [email protected] (A.N.M.); [email protected] (H.S.); [email protected] (A.T.) 
 Division of International Research Promotion, International Institute for Zoonosis Control, Hokkaido University, N20 W10, Kita-ku, Sapporo 001-0020, Japan; [email protected] (M.K.); [email protected] (N.N.); Hokudai Center for Zoonosis Control in Zambia, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia; [email protected] 
 Division of International Research Promotion, International Institute for Zoonosis Control, Hokkaido University, N20 W10, Kita-ku, Sapporo 001-0020, Japan; [email protected] (M.K.); [email protected] (N.N.); Hokudai Center for Zoonosis Control in Zambia, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia; [email protected]; One Health Research Center, Hokkaido University, N18 W9, Kita-ku, Sapporo 001-0020, Japan 
 Department of Paraclinical Studies, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia; [email protected] 
 Division of Global Epidemiology, International Institute for Zoonosis Control, Hokkaido University, N20 W10, Kita-ku, Sapporo 001-0020, Japan; [email protected] 
 Hokudai Center for Zoonosis Control in Zambia, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia; [email protected]; International Collaboration Unit, International Institute for Zoonosis Control, Hokkaido University, N20 W10, Kita-ku, Sapporo 001-0020, Japan; Laboratory of Microbiology, Department of Disease Control, Faculty of Veterinary Medicine, Hokkaido University, N18 W9, Kita-ku, Sapporo 060-0818, Japan; Division of Biological Response Analysis, Institute for Vaccine Research and Development (IVReD), Hokkaido University, N21 W11, Kita-ku, Sapporo 001-0020, Japan 
 Department of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia; [email protected] (N.S.); [email protected] (J.N.); [email protected] (A.N.M.); [email protected] (H.S.); [email protected] (A.T.); Africa Centre of Excellence for Infectious Diseases of Humans and Animals, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia; Division of International Research Promotion, International Institute for Zoonosis Control, Hokkaido University, N20 W10, Kita-ku, Sapporo 001-0020, Japan; [email protected] (M.K.); [email protected] (N.N.); Hokudai Center for Zoonosis Control in Zambia, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia; [email protected]; One Health Research Center, Hokkaido University, N18 W9, Kita-ku, Sapporo 001-0020, Japan; International Collaboration Unit, International Institute for Zoonosis Control, Hokkaido University, N20 W10, Kita-ku, Sapporo 001-0020, Japan; Division of Biological Response Analysis, Institute for Vaccine Research and Development (IVReD), Hokkaido University, N21 W11, Kita-ku, Sapporo 001-0020, Japan; Division of Molecular Pathobiology, International Institute for Zoonosis Control, Hokkaido University, N20 W10, Kita-ku, Sapporo 001-0020, Japan; Global Virus Network, 725 W Lombard Street, Baltimore, MD 21201, USA 
 Department of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia; [email protected] (N.S.); [email protected] (J.N.); [email protected] (A.N.M.); [email protected] (H.S.); [email protected] (A.T.); Africa Centre of Excellence for Infectious Diseases of Humans and Animals, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia; One Health Research Center, Hokkaido University, N18 W9, Kita-ku, Sapporo 001-0020, Japan; Division of Global Epidemiology, International Institute for Zoonosis Control, Hokkaido University, N20 W10, Kita-ku, Sapporo 001-0020, Japan; [email protected]; International Collaboration Unit, International Institute for Zoonosis Control, Hokkaido University, N20 W10, Kita-ku, Sapporo 001-0020, Japan 
10  Department of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia; [email protected] (N.S.); [email protected] (J.N.); [email protected] (A.N.M.); [email protected] (H.S.); [email protected] (A.T.); Macha Research Trust, Choma 20100, Zambia 
First page
354
Publication year
2024
Publication date
2024
Publisher
MDPI AG
e-ISSN
20762607
Source type
Scholarly Journal
Language of publication
English
ProQuest document ID
2931014533
Copyright
© 2024 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.