Abstract

In computational molecular and materials science, determining equilibrium structures is the crucial first step for accurate subsequent property calculations. However, the recent discovery of millions of new crystals and super large twisted structures has challenged traditional computational methods, both ab initio and machine-learning-based, due to their computationally intensive iterative processes. To address these scalability issues, here we introduce DeepRelax, a deep generative model capable of performing geometric crystal structure relaxation rapidly and without iterations. DeepRelax learns the equilibrium structural distribution, enabling it to predict relaxed structures directly from their unrelaxed ones. The ability to perform structural relaxation at the millisecond level per structure, combined with the scalability of parallel processing, makes DeepRelax particularly useful for large-scale virtual screening. We demonstrate DeepRelax’s reliability and robustness by applying it to five diverse databases, including oxides, Materials Project, two-dimensional materials, van der Waals crystals, and crystals with point defects. DeepRelax consistently shows high accuracy and efficiency, validated by density functional theory calculations. Finally, we enhance its trustworthiness by integrating uncertainty quantification. This work significantly accelerates computational workflows, offering a robust and trustworthy machine-learning method for material discovery and advancing the application of AI for science.

Structure relaxation is an iterative process particularly demanding in large-scale material discovery campaigns. Here, the authors realize a deep generative model able to relax material structures in a single step while estimating its accuracy.

Details

Title
Scalable crystal structure relaxation using an iteration-free deep generative model with uncertainty quantification
Author
Yang, Ziduo 1 ; Zhao, Yi-Ming 2   VIAFID ORCID Logo  ; Wang, Xian 3 ; Liu, Xiaoqing 2 ; Zhang, Xiuying 2 ; Li, Yifan 2 ; Lv, Qiujie 4 ; Chen, Calvin Yu-Chian 5   VIAFID ORCID Logo  ; Shen, Lei 6   VIAFID ORCID Logo 

 National University of Singapore, Department of Mechanical Engineering, Singapore, Singapore (GRID:grid.4280.e) (ISNI:0000 0001 2180 6431); Shenzhen Campus of Sun Yat-sen University, Artificial Intelligence Medical Research Center, School of Intelligent Systems Engineering, Shenzhen, China (GRID:grid.12981.33) (ISNI:0000 0001 2360 039X); Peking University Shenzhen Graduate School, AI for Science (AI4S)-Preferred Program, School of Electronic and Computer Engineering, Shenzhen, China (GRID:grid.11135.37) (ISNI:0000 0001 2256 9319) 
 National University of Singapore, Department of Mechanical Engineering, Singapore, Singapore (GRID:grid.4280.e) (ISNI:0000 0001 2180 6431) 
 National University of Singapore, Department of Physics, Singapore, Singapore (GRID:grid.4280.e) (ISNI:0000 0001 2180 6431) 
 National University of Singapore, Department of Mechanical Engineering, Singapore, Singapore (GRID:grid.4280.e) (ISNI:0000 0001 2180 6431); Shenzhen Campus of Sun Yat-sen University, Artificial Intelligence Medical Research Center, School of Intelligent Systems Engineering, Shenzhen, China (GRID:grid.12981.33) (ISNI:0000 0001 2360 039X) 
 Peking University Shenzhen Graduate School, AI for Science (AI4S)-Preferred Program, School of Electronic and Computer Engineering, Shenzhen, China (GRID:grid.11135.37) (ISNI:0000 0001 2256 9319); Peking University Shenzhen Graduate School, State Key Laboratory of Chemical Oncogenomics, School of Chemical Biology and Biotechnology, Shenzhen, China (GRID:grid.11135.37) (ISNI:0000 0001 2256 9319); China Medical University Hospital, Department of Medical Research, Taichung, Taiwan (GRID:grid.411508.9) (ISNI:0000 0004 0572 9415); Asia University, Department of Bioinformatics and Medical Engineering, Taichung, Taiwan (GRID:grid.252470.6) (ISNI:0000 0000 9263 9645); Ltd., Guangdong L-Med Biotechnology Co., Meizhou, China (GRID:grid.252470.6) 
 National University of Singapore, Department of Mechanical Engineering, Singapore, Singapore (GRID:grid.4280.e) (ISNI:0000 0001 2180 6431); National University of Singapore (Chongqing) Research Institute, Chongqing, China (GRID:grid.4280.e) (ISNI:0000 0001 2180 6431) 
Pages
8148
Publication year
2024
Publication date
2024
Publisher
Nature Publishing Group
e-ISSN
20411723
Source type
Scholarly Journal
Language of publication
English
ProQuest document ID
3106220834
Copyright
© The Author(s) 2024. This work is published under http://creativecommons.org/licenses/by-nc-nd/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.