Content area

Abstract

Optimal contribution selection (OCS) is a selective breeding method that manages the conversion of genetic variation into genetic gain to facilitate short-term competitiveness and long-term sustainability in breeding programmes. Traditional approaches to OCS do not account for uncertainty in input data, which is always present and challenges optimization and practical decision making. Here we use concepts from robust optimization to derive a robust OCS problem and develop two ways to solve the problem using either conic optimization or sequential quadratic programming. We have developed the open-source Python package 'robustocs' that leverages the Gurobi and HiGHS solvers to carry out these methods. Our testing shows favourable performance when solving the robust OCS problem using sequential quadratic programming and the HiGHS solver.

Details

1009240
Identifier / keyword
Title
Robust Optimal Contribution Selection
Publication title
arXiv.org; Ithaca
Publication year
2024
Publication date
Dec 3, 2024
Section
Mathematics
Publisher
Cornell University Library, arXiv.org
Source
arXiv.org
Place of publication
Ithaca
Country of publication
United States
University/institution
Cornell University Library arXiv.org
e-ISSN
2331-8422
Source type
Working Paper
Language of publication
English
Document type
Working Paper
Publication history
 
 
Online publication date
2024-12-05
Milestone dates
2024-12-03 (Submission v1)
Publication history
 
 
   First posting date
05 Dec 2024
ProQuest document ID
3141258040
Document URL
https://www.proquest.com/working-papers/robust-optimal-contribution-selection/docview/3141258040/se-2?accountid=208611
Full text outside of ProQuest
Copyright
© 2024. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
Last updated
2024-12-06
Database
ProQuest One Academic