Content area

Abstract

The Common Workflow Language (CWL) is a widely adopted language for defining and sharing computational workflows. It is designed to be independent of the execution engine on which workflows are executed. In this paper, we describe our experiences integrating CWL with Parsl, a Python-based parallel programming library designed to manage execution of workflows across diverse computing environments. We propose a new method that converts CWL CommandLineTool definitions into Parsl apps, enabling Parsl scripts to easily import and use tools represented in CWL. We describe a Parsl runner that is capable of executing a CWL CommandLineTool directly. We also describe a proof-of-concept extension to support inline Python in a CWL workflow definition, enabling seamless use in the Python ecosystem of Parsl. We demonstrate the benefits of this integration by presenting example CWL CommandLineTool definitions that show how they can be used in Parsl, and comparing performance of executing an image processing workflow using the Parsl integration and other CWL runners.

Details

1009240
Title
Parsl+CWL: Towards Combining the Python and CWL Ecosystems
Publication title
arXiv.org; Ithaca
Publication year
2024
Publication date
Dec 11, 2024
Section
Computer Science
Publisher
Cornell University Library, arXiv.org
Source
arXiv.org
Place of publication
Ithaca
Country of publication
United States
University/institution
Cornell University Library arXiv.org
e-ISSN
2331-8422
Source type
Working Paper
Language of publication
English
Document type
Working Paper
Publication history
 
 
Online publication date
2024-12-12
Milestone dates
2024-12-11 (Submission v1)
Publication history
 
 
   First posting date
12 Dec 2024
ProQuest document ID
3143451231
Document URL
https://www.proquest.com/working-papers/parsl-cwl-towards-combining-python-ecosystems/docview/3143451231/se-2?accountid=208611
Full text outside of ProQuest
Copyright
© 2024. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
Last updated
2024-12-13
Database
ProQuest One Academic