Content area

Abstract

We introduce InMoose, an open-source Python environment aimed at omic data analysis. We illustrate its capabilities for bulk transcriptomic data analysis. Due to its wide adoption, Python has grown as a de facto standard in fields increasingly important for bioinformatic pipelines, such as data science, machine learning, or artificial intelligence (AI). As a general-purpose language, Python is also recognized for its versatility and scalability. InMoose aims at bringing state-of-the-art tools, historically written in R, to the Python ecosystem. InMoose focuses on providing drop-in replacements for R tools, to ensure consistency and reproducibility between R-based and Python-based pipelines. The first development phase has focused on bulk transcriptomic data, with current capabilities encompassing data simulation, batch effect correction, and differential analysis and meta-analysis.

Details

1009240
Business indexing term
Title
Bridging the gap between R and Python in bulk transcriptomic data analysis with InMoose
Volume
15
Issue
1
Pages
18104
Publication year
2025
Publication date
2025
Publisher
Nature Publishing Group
Place of publication
London
Country of publication
United States
Publication subject
e-ISSN
20452322
Source type
Scholarly Journal
Language of publication
English
Document type
Journal Article
Publication history
 
 
Online publication date
2025-05-24
Milestone dates
2025-05-20 (Registration); 2025-01-17 (Received); 2025-05-20 (Accepted)
Publication history
 
 
   First posting date
24 May 2025
ProQuest document ID
3210730858
Document URL
https://www.proquest.com/scholarly-journals/bridging-gap-between-r-python-bulk-transcriptomic/docview/3210730858/se-2?accountid=208611
Copyright
Copyright Nature Publishing Group 2025
Last updated
2025-06-03
Database
ProQuest One Academic