Introduction
The modern Eurasian badgers of the genus Meles Brisson, 1762 are medium-sized omnivorous mustelids with a wide geographic distribution from the British Isles and the Iberian Peninsula in the west to the Japanese Islands in the east, and from Scandinavia and Western Siberia in the north to Southwest Asia and South China in the south (Proulx et al. 2016). Throughout its wide range, the badger displays a significant morphological variation (Abramov 2002, 2003; Abramov and Puzachenko 2005, 2006; Abramov et al. 2009) and a strong genetic divergence (Marmi et al. 2006; Del Cerro et al. 2010; Tashima et al. 2011a, 2011b; Kinoshita et al. 2017).
According to current thinking (Del Cerro et al. 2010; Abramov and Puzachenko 2013; Proulx et al. 2016), the genus Meles consists of four species – European badger (Meles meles), Southwest Asian badger (Meles canescens), Asian badger (Meles leucurus), and Japanese badger (Meles anakuma).
The European badger occurs across Europe, from Portugal and Ireland to Volga River in Russia, and from Scandinavian countries to as far south as the North Caucasus. The Southwest Asian badger is known from the Caucasus including the northern slope of the Great Caucasus Range, Turkey, Iran, Iraq, Syria, Lebanon, Israel, northern Afghanistan, Turkmenistan, Kirgizstan, Uzbekistan and Tajikistan (the foothills of the Western Tien Shan and Pamir-Alai mountains). It is also found in the Mediterranean islands: Crete and Rhodes. The Japanese badger is endemic to Japan. The species is common throughout Honshu, Kyushu, and Shikoku, but absent from Hokkaido. The Asian badger is found from Volga River throughout Siberia, up to the Primorye of the Russian Far East and Korean Peninsula in the east. It also occurs in Uzbekistan and Kazakhstan, and is found as far south as the southern provinces of China.
The analysis of cranial characters and genetic data has revealed a significant difference between the western, i.e. “European”, and eastern, i.e. “Asian”, Meles lineages, and thus their splitting in two pairs of taxa: meles – canescens and leucurus – anakuma is considered well justified (Abramov and Puzachenko 2013; Kinoshita et al. 2017).
Intraspecific variability in recognised badger species is known to be rather low. According to recent taxonomical reviews (Abramov and Puzachenko 2006; Abramov et al. 2009; Proulx et al. 2016), the European badger Meles meles can be subdivided into three subspecies: the widespread European M. m. taxus and two Scandinavian taxa, M. m. meles and M. m. milleri . For some time, badgers from Crete and Rhodes were considered separate subspecies arcalus Miller, 1907 and rhodius Festa, 1914, respectively (see Wozencraft 2005). A comparative analysis of tooth morphology (Baryshnikov et al. 2003) and mitochondrial and nuclear DNA data (Marmi et al. 2005, 2006; Del Cerro et al. 2010) enables the isolated badger populations from these Mediterranean islands to be considered conspecific with M. canescens .
The intraspecific variability of the eastern lineage badger species, M. leucurus and M. anakuma, is studied less. The Japanese badger has a very low level of morphological and genetic diversity (Kurose et al. 2001; Abramov and Puzachenko 2005). The variation in the Asian badger is much more complicated. Throughout its wide range, the Asian badger shows a great deal of variability in fur pattern and size, which has led to the description of many (sub)species taxa from China (leptorynchus, chinensis, hanensis, siningensis, tsingtauensis), Kazakhstan (arenarius, tianschanensis), Kirgizstan (talassicus), Altai (altaicus), West Siberia (sibiricus), Transbaikalia (raddei), the Russian Far East (amurensis, schrenkii), Korea (melanogenys). Small-sized and dark-coloured Far Eastern badgers from Primorye (Russia), Korean Peninsula and Manchuria (north-eastern China), M. l. amurensis, represent the most distinctive form among all Asian badgers. According to Abramov and Puzachenko 2006 and Larivière and Jennings (2009), there are two subspecies of M. leucurus : the nominotypical M. l. leucurus, found throughout most of its range, and M. l. amurensis, found in the Far East. According to Ognev (1962) and Heptner et al. (1967), the putative border between ranges of these subspecies lies in Amur River Basin, near 123°E.
Many researchers have noted significant differences in the size and colour of Far Eastern badgers compared to other Asian badgers. The taxonomic status of the Far Eastern badger and, in particular, its phylogenetic relationship with the Japanese badger were interpreted differently by different researchers. Most taxonomists (Kashchenko 1902; Satunin 1905; Novikov 1956; Ognev 1962; Abramov 2001, 2003; Wozencraft 2005; Abramov and Puzachenko 2006) were of the opinion that the Far Eastern badgers are closer to Siberian populations of M. leucurus than to the Japanese badger. Others, on the contrary, considered the badgers of Primorye and Korea to be closer to the last species (Petrov 1953; Heptner et al. 1967; Baryshnikov and Potapova 1990). The relative affinity between M. l. amurensis and M. anakuma was discussed before (Abramov and Puzachenko 2013 : fig. 2). The most original hypothesis proposed by one of us (VY, unpublished) considers the Far Eastern form as a separate species.
In this study, we have looked in more detail at the cranial variability of Asian badgers, taking into account the extensive additional material from the Russian Far East. Comparative material from other Meles species – the European, Southwest Asian and Japanese badgers – were included in the present analysis. The aim of this paper is to revise the geographical variability of Asian badgers in order to assess the taxonomic position of the Far Eastern subspecies M. l. amurensis .
Material and Methods
Sample collection and measurements
This study is based on 339 adult skulls belonging to the Japanese badger (M. anakuma) and the Asian badger (M. leucurus sensu lato; Table 1; File S1; Table S4).
Table 1. Skulls used in this study.
Taxa | Number | Males | Females | Sex unknown |
Basic sample (a priori classification) | ||||
M. anakuma | 15 | 4 | 4 | 7 |
M. l. leucurus (expert evaluation) | 117 | 57 | 24 | 36 |
M. l. amurensis (expert evaluation) | 207 | 75 | 66 | 66 |
Addition sample | ||||
M. meles | 465 | 261 | 204 | — |
M. canescens | 71 | 45 | 26 | — |
Total | 875 | 442 | 324 | 109 |
The additional material included 536 adult skulls of the European badger (M. meles) and the Southwest Asian badger (M. canescens). Age classes were defined by scoring morphological skull features, such as the development of crests, the obliteration of sutures and tooth wear (Hysing-Dahl 1959; Wiig 1986).
Most of the material was collected in the 20th century. A small part of our sample was collected in the 19th century and at the beginning of the 21st century. We examined the skulls of M. anakuma and M. leucurus deposited in the collections of 16 museums and institutions throughout the world (File S1). A significant number of M. leucurus skulls from the eastern part of species range was collected by the second author, V. Yudin. Additional material on the European and Southwest Asian badgers was described in details earlier (Abramov and Puzachenko 2013). Specimens of M. leucurus were provisionally divided into the geographical samples associated with the two subspecies – M. m. leucurus and M. l. amurensis . This expert split (a priori classification) was used as an external hypothesis for comparison with the results of sample clustering based on morphometric data.
Thirty measurements were made using a digital sliding calliper to the nearest 0.1 mm. A list and a scheme of cranial measurements are presented in Figure 1 .
Sexual size dimorphism (SSD)
Sexual dimorphism in skull size (SSD) is weakly expressed in the genus Meles (Abramov and Puzachenko 2005). Males and females can be reliably distinguished by the size of their canines, which is typical for mustelids and other carnivorous mammals. Because Asian badger subspecies differ in skull sizes (Abramov and Puzachenko 2013), the presumed sex of specimens was assessed separately within “ leucurus ” and “ amurensis ” samples. Our sample also included 109 (32%) Asian badger skulls where the sex was unknown. The discriminant analysis was used to find out whether these specimens were males or females. For the assessment of SSD, standard methods of univariate analyses were used. Two indices were calculated for each measurement: SSD1 = 100*[(Mm – Mf)/(Mm + Mf)], SSD2 = 100* [(Mm – Mf)/Mm]. We used SSD1 in (Abramov and Puzachenko 2005) to account for the contribution of both sexes to SSD . Smith (1999) provides some criticism of SSD2, which was widely used. We used it here, both traditionally and because this ratio shows how much larger (in percentage) males are on average than females. The statistical significance of differences between males and females was assessed using the Welch’ F test in Past (Hammer et al. 2001). When interpreting the test results, sample size must be taken into account, as statistical significance is positively correlated with sample size. In other words, low p-values (<< 0.05) do not guarantee the high morphological differentiation that is actually observed. The male and female samples were then examined separately.
Multivariate analysis
First, we formally defined a “morphological system” as the logical intersection of a set of skulls (elements), a set of measurements (variables, which can assume different states) and a set of metrics (methods of measuring similarities or dissimilarities between elements) (Abramov and Puzachenko 2005; Abramov et al. 2009; Puzachenko 2023). The two types of morphospaces were modelled using a non-metric multidimensional scaling method (Davison 1983). The first model describes size variability (SZM, based on a matrix of Euclidean distances) and the second model describes shape variability of the skull (SHM, based on Kendall’s tau-b associations matrix (Kendall 1957)). Some more details see in File S1 in the section “The concepts and applications of morphosystem and morphospace”. In the text, SZM and SHM coordinates of the models are denoted by the letters E (from E uclidean distance) and K (from K endall’s tau-b metric), respectively. The quality of the description of the raw measurement was assessed by the square of the multiple correlation coefficient of multivariate regression models using the coordinates of the SZM and SHM models as predictors.
Sample partitioning methods and cluster validation
(For more details see File S1). The assumption (null hypothesis) of homogeneity of the Asian badger sample was tested using various agglomerative and divisive cluster analysis methods (Rencher 2002). Textbooks usually recommend comparing the classification results obtained by different methods in order to assess the “stability” of the partitioning (Aldenderfer and Blashfield 1984).
Three sets of variables – the coordinates of the SZM or SHM morphospaces individually and in combination – were used to partition the combined M. leucurus and M. anakuma sample. Five different partitioning methods were used. Three of them were non-hierarchical clustering methods: K-means (KM) (Rencher 2002), partitioning around medoids (PAM) (Kaufman and Rousseeuw 1990), and Gaussian finite mixture model with expectation-maximization algorithm (GFM) (Quiles et al. 2005; Scrucca et al. 2016). The next two methods, UPGMA (Sokal and Michener 1958) and McQuitty (MQ) methods (McQuitty 1966), belong to the hierarchical clustering methods (Charrad et al. 2014). We used the following R packages: NbClust 3.0.1 “Determining the Best Number of Clusters in a Data Set” (Charrad et al. 2014), mclust 6.1.1 “Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation” (Scrucca et al. 2016), and fpc 2.2–12 “Flexible Procedures for Clustering” (Hennig 2024). All packages implement criteria to find the best/optimal/relevant number of clusters for different methods of sample partitioning. Based on the results of the tests, we were able to estimate the range for the possible optimal number of clusters and the number of clusters that occurred most frequently. The latter was accepted as the presumed most likely optimal partitioning of the sample, least dependent on the clustering method. Note that if the most likely number of clusters was 1, this would be evidence in favor of the hypothesis of sample homogeneity. This hypothesis can also be supported by the random variation in the number of clusters over a wide range. The result of calculations is given in File S1.
We calculated cross-tabulations between formal clusters and the expert division of the sample into subsamples of M. l. leucurus, M. l. amurensis and M. anakuma . Maximum likelihood chi-square (Özdemir and Eyduran 2005; Howell 2011) was used to test the hypothesis of independence of the two compared distributions of specimens across clusters (File S1). In addition, we calculated the correctly classified rate (CCR) in the M. l. leucurus – M. l. amurensis pair and separately in the M. anakuma – M. l. amurensis pair. The CCR is the ratio of correctly classified specimens to the total number of specimens in the groups of badgers being compared. The term “correctly classified” is directly applicable only to the M. anakuma . In all other cases, it means only the agreement between the expert and the formal classifications.
To test the stability of the partitioning of the Asian and Japanese badger sample, we calculated the frequencies of occurrence of each specimen in different clusters under different combinations of coordinates of the SZM or SHM and clustering methods. The set of elements that repeatedly (with a frequency greater than 0.9) fell into the same cluster, regardless of the clustering method or combination of coordinates used, was termed the “kernel”. The kernels were combined in training sample in linear stepwise discriminant analysis with forward and backward variants. The raw skull measurements (p1–p31) were used as predictors. Finally, for every element that was not included in the kernels, the average of posterior probabilities obtained in forward and backward variants of analysis was used as the probability of their assignment to one or another cluster. The purpose of this analysis is to identify skulls with “intermediate” or “outlier” skull measurements.
To assess the position of the Far Eastern badger relative to M. anakuma or M. l. leucurus sensu stricto, we evaluated the positions of all of them in the general context of the morphological variability of all Eurasian badgers Meles . For this purpose, SZM and SHM models were constructed as described above. Both models were then combined into a single model using the principal component method (PCA). Thus the latter model described both size and shape variability in Meles skull.
Multivariate allometry
The PCA of the variance-covariance matrix of log-transformed measurements were used to calculate the multivariate allometric coefficients (MAC) (Jolicoeur 1963, Klingenberg 1996). In this study, the MAC was used to compare males of M. leucurus or M. l. amurensis (File S1).
Paleogeography
In this study, we follow a simplified ‘rough’ chronological scheme of Pleistocene Eurasian fossil badger divergence, focusing primarily on the likely ancestors of recent Asian badgers (Koepfli et al. 2008; Jiangzuo et al. 2018). In particular, the data were pooled for the following chronotaxa: 1) “thorali”-like badgers – M. thorali, M. iberica, M. dimitrius, and M. hollitzerii; 2) “chiai”-like badgers – M. chiai, M. minor, M. magnus and M. teilhardi . We collected 723 sites/localities across Eurasia with the remains of Meles dated from the Early Pleistocene to the Early-Middle Holocene. All of them were dated using different qualitative or quantitative methods (File S3). A series of four maps were produced showing badger sites in the Early Pleistocene (~2.5–0.9 Ma; 53 sites), Middle Pleistocene (~0.8–0.13 Ma; 102 sites), Late Pleistocene (~0.13–0.0117 Ma; 337 sites) and Early to Middle Holocene (~11.7–3.0 kyr BP; 233 sites). The choice of such intervals on the Pleistocene timescale was mainly determined by the distribution of palaeontological sites, which increases almost exponentially as we approach modern times. In order to assess the representativeness of the palaeontological data, the maps illustrating badger distribution in the Early and Middle Pleistocene show the points of 1174 localities where no remains of Meles were found (File S3). The generalised boundaries of the ice cover were shown on the maps of the different marine isotope stages (MIS) according to (Batchelor et al. 2019): MIS16, MIS12, MIS6, and MIS2 glaciations.
Software used
In addition to the R packages listed above, we used the following software NCSS 12 Statistical Software (2018) (Professional License (Perpetual)) to perform nonmetric multidimensional scaling, Kendall’s tb calculation, cross tabulation procedures, and maximum likelihood chi-squared tests. Free software PAST v. 4.14 (Hammer et al. 2001) used to perform PCA, calculation of Euclidean distance, MAC, descriptive and univariate statistics.
Results
Description of the SZM/SHM morphospace
For males and females, the optimal dimensionality of the SZM and SHM morphospace models was two. The low dimensionality indicates highly coordinated variability of individual skull parts in Asian badgers. Despite the low dimensionality of the SZM, its coordinates reproduce well the variation in morphological distances and cranial measurements. The correlation coefficient between morphological distances (Euclid or Kendall’s tb) and the distance between individuals in the SZM morphospace was 0.97 for males and 0.98 for females, and in the SHM model – 0.78 and 0.86, respectively. The mean r2 values in multivariate regression models for males and females were approximately the same and equal to ~0.64 (0.12–0.94) (File S1
SZM and SHM coordinates combination: method of partition | Males (n = 205) | Females (n = 134) | ||||
M. a. – M. l. a. | M. l. l. – M. l. a. | MLC | M. a. – M. l. a. | M. l. l. – M. l. a. | MLC | |
CCR | CCR | |||||
E1, E2, K1, K2: GFM | 0.21 | 0.86 | 126.40 | 0.13 | 0.93 | 88.06 |
E1, E2, K1, K2: KM | 0.22 | 0.86 | 123.37 | 0.16 | 0.91 | 90.47 |
E1, E2, K1, K2: PAM | 0.19 | 0.86 | 120.10 | 0.14 | 0.92 | 83.94 |
E1, E2, K1, K2: UPGMA | 0.22 | 0.81 | 88.07 | 0.22 | 0.89 | 81.80 |
E1, E2, K1, K2: MQ | 0.41 | 0.79 | 118.12 | 0.67 | 0.65 | 38.52 |
Mean ± m | 0.25±0.04 | 0.84±0.02 | 115.2±6.9 | 0.26±0.1 | 0.86±0.05 | 76.6±9.6 |
The mean CCR (Table 2) for the pair of M. l. amurensis – M. l. leucurus was 0.84 (males) and 0.86 (females). In the M. anakuma – M. l. amurensis pair, this value was low – 0.25 (males) and 0.26 (females). When the SZM or SHM model coordinates were used separately, the general tendency to group Far Eastern and Japanese badgers into one cluster was generally maintained, as was the tendency to discriminate between M. l. amurensis and M. l. leucurus (File S1). The obtained sample partitioning demonstrates the high morphometric specificity of Far Eastern badgers with respect to other M. leucurus and, in parallel, brings them closer to the island species M. anakuma .
Results of discriminant analysis
The division of Asian badgers into two clusters is the most probable (in terms of frequency of occurrence) and optimal according to most criteria. In this case, Japanese badgers are included in one cluster with the Far East badgers and contrasted with the rest of the continental Asian badgers. The proportion of specimens included in the “kernels” of two clusters was about 67% in the male sample and 88% in the female sample (File S2 [tables S4, S5]). Stepwise discriminant analysis was used to classify specimens not included in the cluster’s “kernels” (Fig. 2). In the male sample, 89.7% of the specimens had a posterior probability of membership in one of the two clusters greater than 0.90. This proportion was higher for females – 0.98.5%. As a result, we refined the a priori classification of continental Asian badgers into M. l. leucurus and M. l. amurensis . About 10% of the skulls had morphometric characteristics intermediate between M. l. leucurus and M. l. amurensis . These specimens are of particular interest because their presence in the sample leads to the observed instability of the classification.
Identification of specimens characterised by intermediate cranial features between M. l. amurensis and M. l. leucurus
Males and females for which the posterior probability was below 0.9 were divided into two groups. They included specimens from a region where an overlap between the ranges of M. l. leucurus and M. l. amurensis cannot be excluded at the present time, i.e. is somewhere ~113–134ºE (Fig. 3). The group “ amurensis – leucurus ” included 6 skulls (all males) that were similar to the representatives of M. l. amurensis, but in some features they were close to the M. l. leucurus . The group “ leucurus – amurensis ” included 9 specimens (8 males and 1 female) that were more similar to the skulls of M. l. leucurus, but also in some features resembled the skulls of M. l. amurensis . We labelled the next group as “deviant”, which included skulls of 12 badgers (10 males, 2 females) from the western part of the range where the presence of M. l. amurensis is highly unlikely. They were either consistently classified as “ amurensis ” with a high probability, or had a low probability of being assigned to the morphological cluster associated with “ leucurus ”.
Morphometric description of M. l. leucurus and M. l. amurensis
In terms of general skull size, all Asian badgers form a series (from smaller to larger): Meles anakuma < M. l. amurensis < M. l. leucurus (File S1 [tables S2, S3]). Differences between the males of M. l. leucurus and M. l. amurensis have a high level of statistical significance and cover the entire skull and mandible with the exception of cheek teeth but not canines: width/length of M1, width/length of m2, talonid length of m1, length of lower premolar Pm2 and upper Pm4. Thus, M. l. amurensis has relatively larger premolars and molars compared to M. l. leucurus . The variability described above can be interpreted as geographical, but not as cline. It should be emphasised that no morphological hiatus between M. l. amurensis and M. l. leucurus was found for any of the measurements (example in Fig. 4).
“Intermediate” and “deviate” specimens
There are several specimens in our collection that occupy an intermediate position between M. l. amurensis and M. l. leucurus (Fig. 5; Supplementary Data SD1, Table S2 and Table S3). The proportion of “intermediate” specimens was 6.66% in the male sample of M. l. amurensis and 7.54% in the male sample of M. l. leucurus . Only one “intermediate” skull was found among M. l. amurensis females. Such specimens were absent in a relatively small sample of the females of M. l. leucurus .
On average, these skulls were slightly larger than those of the typical “ amurensis ”, but slightly smaller than those of the typical “ leucurus ”. The average condylobasal skull length of males from the “ amurensis–leucurus ” group is large significantly (p = 0.0003, according to Welch F’ test) than that of M. l. amurensis and its minimum and maximum values are close to the upper limit of this measurement in M. l. amurensis . A similar variation was described for cranial mastoid width, interorbital width, length between angular process and infradentale, and several other measurements. The maximally pronounced (p < 0.000001) difference from the typical “ amurensis ” was found for the mandibular length. In addition, it is worth noting that the interorbital width in this “intermediate” group was the same as in the typical “ leucurus ” (Fig. 5). Specimens from the “ leucurus–amurensis ” group were smaller than typical “ leucurus ” in a number of measurements, most notably, in the condylobasal length (p < 0.000001) and the mastoid width of the skull (p < 0.00005). The measurements in this group were slightly larger or almost equal to those in the “ amurensis–leucurus ” group, but in some cases they were slightly smaller (e.g. the width of auditory bulla; Fig. 5). The interesting group of “deviate” skulls of M. l. leucurus differed from the typical “ leucurus22.5.2025 г. 15:10:24 ” in smaller cranial dimensions, mainly because of a shortening of the viscerocranial part of the skull. The most significant differences (p < 0.000001) were observed for the length of the mandible. It is also worth emphasising that the small distance between orbits was very close to that of M. l. amurensis (Fig. 5). The characteristics of tooth rows were relatively stable, i.e. their variability was little or practically not affected by the variability of overall cranial dimensions. Such size independence is most clearly expressed in the length variability of the second lower molar (Fig. 5).Comparison of multivariate allometric patterns in typical M. l. amurensis and M. l. leucurus
MAC values were between 0.5 and 1, indicating weak negative allometry or isometry), but this does not apply to dental measurements. In M. l. amurensis, the length of the upper carnassial tooth is characterised by isometry or a weak positive allometry. In M. l. leucurus, this measurement shows moderately high positive allometry, i.e. the tooth length increases slightly faster than the general cranial dimensions. In M. l. leucurus, the same positive allometry is found for the width of the upper molar M1 and the length of the lower carnassial tooth m1. At the same time, the length of the upper molar M1 does not increase at the same rate, so that this tooth is relatively shorter and wider in larger skulls. The talonid of the m1 is characterised by a strong positive allometry, which is higher than that of its length. Because of this allometry, larger animals have a relatively larger talonid. The length of the lower premolar pm2 shows a very strong positive allometry, especially in M. l. amurensis . The high individual variability of the morphometric parameters of pm2, M1, m1 and m2 were reflected in the very wide 95% confidence intervals of the corresponding MACs. The correlation coefficient between the MACs of M. l. amurensis and M. l. leucurus was relatively low (0.73, p < 0.00001, r2 = 0.53). We calculated MACs for different geographical samples of the European badger M. meles (Scandinavia: Norway and Sweden; Continental Europe) and the Southwest Asian badger M. canescens (Abramov et al. 2009; Abramov and Puzachenko 2013). Then we developed a PC model based on a variance-covariance matrix of the MACs including MACs of M. l. amurensis and M. l. leucurus (Fig. 6). The variability of the allometric pattern in badgers depends mainly on the allometry of the length of pm2 (p26), the length of m2 (p27), the talonid of the lower carnassial tooth (p29) and the length of Pm4. Within this variability, Asian badgers (M. l. leucurus, M. l. amurensis) differ from the other Meles .
Sexual size dimorphism of the skulls of M. l. amurensis and M. l. leucurus compared to other Eurasian badgers
In badgers, SSD1 is most pronounced in the length and width of cross-sections of the upper canine (Abramov and Puzachenko 2005; Table 3). In M. anakuma, the longitudinal section of the upper canine was about 12% larger in males than in females. In M. l. amurensis this value was 11.2% and in M. l. leucurus 7.2%. However, SSD along the canine transverse section was more pronounced in M. l. leucurus (10.3%) compared to M. l. amurensis (8.9%). In addition to the canine, several other cranial measurements showed sexual dimorphism, although to a much lesser extent. These include the width of the zygomatic arch (especially in M. m. meles), the width of the rostrum (M. canescens, M. m. meles), the height of the vertical ramus of the mandible (M. canescens) and the length of M1 (M. anakuma). Table 3. SSD2/SSD1 indices of cranial measurements (p1-p31, Var) in Meles taxa.
Var | M. anakuma | M. l. amurensis | M. l. leucurus | M. canescens | M. m. milleri | M. m. meles |
---|---|---|---|---|---|---|
p1 | 0.70/1.40 | 1.31/2.59 a | 1.23/2.44 | 2.30/4.57* | 0.90/1.79# | 1.20/2.37* |
p2 | 0.55/1.09 | 1.72/3.38* | 1.16/2.29 | 1.84/3.62* | 1.06/2.10# | 2.37/4.63* |
p3 | 1.78/3.51 | 1.68/3.29* | 2.03/3.98* | 2.02/3.96# | 1.56/3.07# | 0.94/1.9* |
p5 | 1.06/2.10 | 1.46/2.88* | 0.56/1.11 | 2.06/4.05* | 1.03/2.03# | 1.17/2.31* |
p6 | 1.32/2.61 | 0.99/1.96* | 0.87/1.73 | 2.25/4.39* | 0.92/1.81# | 0.94/1.87* |
p7 | 1.63/3.21 | 1.13/2.24 | 0.63/1.26 | 2.54/4.95# | 0.31/0.63 | 1.29/2.56# |
p8 | 0.50/0.99 | 1.03/2.05 | 0.89/1.76 | 1.75/3.44* | 0.57/1.14# | 1.33/2.62* |
p9 | 0.18/0.36 | 0.45/0.89 | 0.99/1.96 | 1.58/3.12# | 1.03/2.03# | 1.23/2.44# |
p10 | 2.38/4.64 | 2.34/4.57* | 2.57/5.01* | 3.14/6.10* | 2.54/4.96* | 3.94/7.58* |
p11 | 1.64/3.22 | 1.70/3.34* | 1.99/3.91* | 2.90/5.64* | 1.57/3.10* | 2.21/4.32* |
p12 | 0.60/1.21 | 0.10/0.21 | 1.62/3.18 | 0.72/1.43 | 1.95/3.83# | 0.99/1.97# |
p13 | 0.69/1.39 | 0.20/0.39 | 1.81/3.55 | 2.21/4.32# | 2.97/5.77* | 2.05/4.01* |
p14 | 1.75/3.44 | 2.15/4.21* | 2.52/4.92* | 2.95/5.74* | 2.33/4.56* | 2.83/5.51* |
p15 | 1.35/2.63 | 0.81/1.60 | 1.29/2.55 | 1.97/3.86# | 0.87/1.72# | 1.04/2.06* |
p16 | 1.61/3.18 | 1.68/3.30* | 1.96/3.85* | 2.13/4.18* | 2.48/4.84* | 2.74/5.34* |
p17 | 3.15/6.11# | 0.80/1.58 | 0.08/0.16 | 2.44/4.75# | 0.58/1.16 | 1.25/2.46# |
p18 | 0.80/1.59 | 1.69/3.33* | 1.81/3.56 | 2.54/4.96# | 1.48/2.92# | 2.65/5.16* |
p19 | 1.63/3.21 | 1.47/2.91* | 1.42/2.81* | 2.41/4.69* | 1.24/2.45* | 1.25/2.47* |
p20 | 1.67/3.28 | 1.28/2.54* | 1.28/2.55 | 2.32/4.53# | 1.34/2.64* | 1.41/2.77* |
p21 | 1.15/2.28 | 1.22/2.41* | 1.11/2.20 | 2.63/5.13* | 1.15/2.28* | 1.03/2.05* |
p22 | 0.05/0.10 | 1.45/2.85* | 0.96/1.91 | 1.10/2.18# | 0.72/1.42# | 1.27/2.50# |
p23 | 2.45/4.83 | 2.08/4.07* | 2.40/4.69* | 3.33/6.44* | 1.11/2.19# | 1.95/3.82* |
p24 | 0.19/0.38 | 0.05/0.11 | 1.68/3.30 | 0.88/1.74 | 0.28/0.55 | 0.02/0.04 |
p25 | 3.46/6.50# | 0.99/1.97 | 1.92/3.77 | 2.64/5.14# | 1.64/3.23# | 1.50/2.95* |
p26 | 6.57/12.33 | 1.11/2.24 | 1.30/2.56 | 1.54/3.04# | -0.19/-0.37 | 1.20/2.37 |
p27 | 1.19/2.35 | 0.07/0.15 | 1.95/3.82 | 1.93/3.79 | 0.79/1.56 | 0.49/0.97 |
p28 | 0.32/0.64 | 0.55/1.09 | 1.38/2.73 | 1.48/2.92# | 0.92/1.83# | 1.30/2.57# |
p29 | 0.41/0.82 | 0.04/0.08 | 1.55/3.06 | 0.51/1.0 | 1.65/3.24# | 0.68/1.35 |
p30 | 6.39/12.02# | 5.93/11.20* | 3.71/7.15* | 5.75/10.86* | 4.00/7.69* | 5.51/10.44* |
p31 | 7.95/14.73# | 4.67/8.93* | 5.40/10.25* | 5.87/11.09* | 3.41/6.59* | 4.86/9.27* |
Notes : * – p < 0.0001 according to the Welch’ F test; # – 0.0001 > p < 0.05 according to the Welch’ F test. |
Position of M. l. amurensis relative to M. anakuma in the context of morphological variability in Eurasian badgers
To assess the degree of divergence in the M. l. amurensis – M. anakuma pair and the M. l. amurensis – M. l. leucurus pair, SZM (three coordinates) and SHM (two coordinates) morphospaces were constructed for all Meles . The PC model combining SZM and SHM (Fig. 7) is interpreted as a metamorphospace of cranial size and shape variations. PC1 correlates with overall skull size (coordinate E1) and explains 78.4% of the variance. All Meles taxa are arranged along PC1, from the smallest Japanese badger to the largest European badger. PC2 correlates mainly with the K2 coordinate. The K2 correlates (r > 0.5) with the width of the mastoid process, the width of auditory bulla, and somewhat less (0.5–0.4) with the length of the auditory bulla and the height of skull. PC3 correlates with the coordinates E3 and K1. The E3 contains information on the variability of the talonid length of m1 and the length of m1 (r > 0.5). The K1 describes the allometry due to the variation of cranial size and is strongly correlated (r > 0.7) with many cranial measurements – viscerocranial length, palatal length, skull height, total length of the mandible, maxillary row length, length of the lower premolar pm2, etc.
The separation of M. anakuma from M. l. amurensis was observed along only the PC3. Consequently, the degree of morphological difference between M. l. amurensis and M. anakuma should be recognised as small one. Therefore, the Japanese badger is more closely related to M. l. amurensis than to M. l. leucurus .
Pleistocene and Holocene paleogeography of Eurasian badgers
(For details see File S3 [tables S6, S7].) The western (“ thorali ”) and eastern (“ chiai ”) lineages of the badger were geographically isolated at least since the Early Pleistocene (Fig. 8) (~2.59 Ma). The absence of badger remains at this time in Eastern Europe, Middle and Central Asia, and West Siberia does not seem to be a consequence of insufficient study. The Prorva site (layer 6, Kazakhstan) is the only known find of Meles sp. in southern West Siberia (Gaiduchenko 1986, cited by Shpansky 2018). The fauna of this stratum is correlated with the Podpusk-Lebyazhe faunal complex, dated to the Matuyama chronozone, below the Reunion subchronozone, i.e. > 2.2 Ma (Vislobokova 1996). During the Middle Pleistocene, the two badger lineages continued to evolve independently (Fig. 8). Badgers of the eastern lineage lived within the presumed modern range of M. m. amurensis . There are known finds of Meles from the Kurtak (= Berezhekovo) site in the upper Yenisei River (Russia), which are restricted to strata roughly corresponding to the MIS9 (0.38– 0.30 Ma) or MIS7 (0.24–0.19 Ma) interglacials (Chlachula 2001; Haesaerts et al. 2005; Malikov 2018). The badger colonisation of Japanese islands most probably occurred during the MIS12 glaciation (0.48–0.42 Ma). This is supported by a find in the Matsugae Cave on Kyushu Island (Ogino et al. 2009; Handa et al. 2021). The Matsugae fauna was correlated with the Quaternary Mammal Zone 4 of the Japanese Islands (0.5–0.3 Ma) and the Asian Choukoutien fauna (Loc. 1) (Ogino et al. 2009).
During the Late Pleistocene (0.13 – 0.01 Ma), the range of the Asian badger expanded. This is supported by numerous finds in southern Siberia (Fig. 8). In particular, badgers appear to have lived permanently in the area of the Sayano-Altai Mountain Region and in Transbaikalia. These areas can be considered the zonal refugia in the Last Glacial Maximum (LGM, MIS2). We assume that at least during the LGM badgers occurring in the ranges of M. l. amurensis and M. l. leucurus were isolated from each other. At that time, the geographical boundary between them could be the Great Khingan Ridge.
Radical changes in the distribution of M. l. leucurus occurred during the Holocene (<0.01 Ma) when badgers dispersed to the south of Western Siberia (Devjashin et al. 2017) and Central Asia (Fig. 8). The species reached the Ural Mountains and the Volga River basins in the late Holocene (Kinoshita et al. 2020). In the latter case, they displaced the M. meles (Gasilin and Kosintsev 2010), which had lived there since at least the Last Interglacial (MIS5, ~0.125 Ma) (Fadeeva et al. 2010; Danukalova et al. 2020; Gimranov and Kosintsev 2020). Note, that this expansion is still in progress today (Oparin et al. 2024). It can be assumed that the range expansion of M. l. leucurus occurred simultaneously in the eastward direction, in the Amur River basin. As they moved in this direction, they could have reached the range of the Far Eastern M. l. amurensis .
As it is evident from the brief review above, in Eurasia the Meles range became continuous only in the Holocene. It is highly likely that the separation of the ancestors of M. anakuma from those of M. l. amurensis occurred no later than in the Middle Pleistocene (~MIS12). Thus, the onset of divergence between M. l. leucurus and M. l. amurensis was probably not earlier than in the MIS8 (0.30–0.24 Ma).
Discussion
Morphological differentiation in Asian badgers
In the present study, we accepted the species taxonomic status of the Japanese (M. anakuma), European (M. meles) and Southwest Asian (M. canescens) badgers as the fact established in previous studies (Del Cerro et al. 2010; Abramov and Puzachenko 2013; Proulx et al. 2016). We critically examined the cranial variations of the Asian badger to test the hypothesis of a greater morphological separation of the badgers living in the southern Far East, at least within the borders of Russia, from the other continental Asiatic badgers. It is generally accepted that these badgers represent a subspecies (M. l. amurensis) that are characterised by a set of traits that distinguish it from another subspecies, M. l. leucurus, which is distributed in the western part of the species range. Several previous studies have noted the morphological distinctiveness of Far Eastern badgers (Petrov 1953; Heptner et al. 1967; Baryshnikov and Potapova 1990; Abramov and Puzachenko 2013). Analysis of body size, colour, cranial features and sexual dimorphism of badgers from the Russian Far East and North Korea showed significant differences from M. l. leucurus . The badgers of the Russian Primorye have a peculiar colouring (Fig. 9). The whole of their coat is dark, with the brown colour dominating, but a high variability was observed. The snout is also dark brownish, and in some specimens the facial stripes are almost invisible. When they are, the pattern of the facial mask resembles that of typical Asian badgers. North Korean badgers are similarly coloured (Abramov 2003). The dark colour and small size are considered the main characteristics of Far Eastern badgers. The absence of upper and lower first premolars is another characteristic of M. l. amurensis . The first premolars are also sometimes missing in M. l. leucurus, M. canescens, and M. meles (very rarely), but these teeth have never been observed in Far Eastern badgers (Baryshnikov and Potapova 1990; Baryshnikov et al. 2003).
In this study, we tested the “neutral” null hypothesis of homogeneity of the Asian badger (M. leucurus) sample. This hypothesis was tested using different clustering techniques to demonstrate the stability/instability of partitioning the sample into clusters that would be essentially invariant with respect to the techniques used. As a result, two subsets were found, in the male and female samples, whose elements were consistently distinguished by all clustering methods. Based on this fact, the hypothesis of sample homogeneity was rejected. One subset included the Far Eastern M. l. amurensis and the Japanese M. anakuma, and the second subset consisted only of the Asian M. l. leucurus .
Here we confirmed statistically significant differences in size of skull between Far Eastern and other continental Asian badgers. The relatively small size of M. l. amurensis brings it closer to the Japanese badger, the smallest of the Meles species. A certain intrigue in the evolutionary relationship between the continental badgers and Japanese badger arises from the assumption that the latter are descended from the continental form, whose descendants are currently represented by the subspecies M. l. amurensis . Unexpectedly, only a small proportion of specimens had skull measurements intermediate between M. l. amurensis and M. l. leucurus . As they came from the area where the ranges of two subspecies of Asian badgers are likely to overlap, it is hypothesised that the “intermediate” specimens may be hybrids between two subspecies. The difference in allometric patterns between M. l. amurensis and M. l. leucurus did not exceed the level of interspecies differences and was smaller than between different samples within the European badger, M. meles . Sexual size dimorphism is weakly expressed in the skulls of Eurasian badgers (Abramov and Puzachenko 2005). In he badgers of continental Asia, the dimorphism varies within the limits characteristic to Meles . The relatively high SSD indices obtained for the Japanese badger need to be verified with a larger sample size than that used in this study.
Finally, we combined morphometric data for all Meles species and assessed the extent of differences between M. l. amurensis and M. l. leucurus, and between M. l. amurensis and M. anakuma . It was shown that M. l. amurensis is indeed morphologically closer to the M. anakuma than to the M. l. leucurus . However, it should be noted that the variability of craniometric traits is primarily continuous within the genus Meles . The morphometrical “niches” of species essentially overlap relative to the main coordinates of model morphospaces (Fig. 7). The absence of clear dichotomies between species had long served as a justification for the monotypic of the genus Meles (Wozencraft 2005).
The divergence of the eastern and western evolutionary lineages has been observed since at least the late Pliocene, but genetic (mtDNA) data do not support substantial divergence between M. leucurus sensu lato and M. meles . Kinoshita et al. (2019) found genetic evidence of hybridisation between both species in the area of modern range overlap. In the sympatry area of M. leucurus with M. canescens in Central Asia (Tien Shan, Turan Lowland), several specimens have been found that can be attributed to “ canescens – leucurus ” hybrids based on morphological features of the skull (Abramov and Puzachenko 2007). Interestingly, the skulls of the presumed hybrids were more similar to M. leucurus than to M. canescens . Therefore, we do not exclude the possibility that the so-called “deviant” specimens found during this study could be of hybrid origin. However, genetic analyses are needed to test this hypothesis.
The results from the studies of genetic diversity of mtDNA and Y chromosomal genes within M. leucurus did not support genetic differentiation between M. l. leucurus and M. l. amurensis based on the set of markers investigated so far (Tashima et al. 2011a, 2011b; Koh et al. 2014; Lee et al. 2016; Luo et al. 2016; Kinoshita et al. 2017). However, the same studies confirmed the genetic differentiation of the island species M. anakuma . Thus, the results of genetic studies to date contradict the evidence for morphometric geographic variability in continental Asian badgers.
Putative origin and migrations of Asian badgers
The radiation of the genus Meles occurred during the general climatic changes that took place during the latest Pliocene and the beginning of Pleistocene as a result of environmental shifts across Eurasia (Faggi et al. 2024). We can speculate that the interval of ~3.5–2.6 Ma could be the time of divergence between the western (“ thorali ”) and eastern (“ chiai ”) lineages of Meles because Arctonyx (Hog badgers) and Meles diverged in Asia between 4.4 and 3.6 Ma (Koepfli et al. 2008). The find of early “ thorali ”–like badger (M. cf. thorali) in Europe was dated to the Villafranchian, MNQ16 (Mammal Neogene Quaternary scheme) (Almenara-Casablanca-4, Spain) (Madurell-Malapeira et al. 2009) or slightly later (Luo et al. 2016). The presence of only M. chiai in the Late Pliocene of China (Jiangzuo et al. 2018) is in agreement with this hypothesis. A tentative chronological “boundary” between M. thorali and M. meles was accepted as about 1.5 Ma (Faggi et al. 2024). It is also possible that M. canescens could have evolved in West Asia at about the same time (Luo et al. 2016).
Jiangzuo et al. (2018) suggested that M. magnus could have been the ancestor of M. leucurus and the latter species did not originate until the mid-Early Pleistocene on the territory of modern China. Based on the palaeontological evidence, we can tentatively assume that the Middle Pleistocene ancestors of M. l. amurensis could have migrated to the Japanese islands via the Korean Peninsula during the period of very significant global sea-level decrease, approximately during the MIS12 glaciation (Yang et al. 2023). However, it could be an earlier migration at the end of the Early Pleistocene (~1 Ma, ~MIS28), if the results by Luo et al. (2016) are taken into consideration.
Our results provide indirect evidence for the proximity of modern M. l. amurensis to the hypothetical Pleistocene ancestor of the Japanese badger, which occurred in eastern and southeastern China in the Middle Pleistocene. In particular, they are closer to the Japanese badger in terms of skull size. Besides, the island and Far Eastern badgers are also closer to each other in general skull shape than to the M. l. leucurus .
We proposed that an ancestor of the recent M. l. leucurus arrived to southern Siberia from the Far East in the Middle Pleistocene during the MIS9 interglacial (0.34–0.30 Ma). The origin of M. l. leucurus took place under the conditions of periodic geographical isolation and in harsher mountainous conditions, with more intense climatic fluctuations during the end of Middle Pleistocene (Lisiecki and Raymo 2005) than those observed in the ancestral range of M. l. amurensis . It is possible that the isolation of M. l. leucurus from M. l. amurensis occurred during glacials of the MIS8 (0.30–0.24 Ma) and MIS6 (0.19–0.13 Ma) and in the first phase of the Last Glaciation (MIS4; 0.071–0.057 Ma) or during the Last Glacial Maximum (MIS2; 0.029–0.017 Ma). The isolation of M. l. leucurus from M. l. amurensis could have been interrupted during interglacial periods, for example, during MIS7 (0.24–0.19 Ma BP) and MIS5 (0.130–0.071 Ma), or even during the megainterstadial MIS3 (0.057–0.029 Ma). Due to several breaks in geographical isolation, putative genetic exchanges between M. l. leucurus and M. l. amurensis could reconcile the results of genetic and morphological studies. However, we have no palaeontological evidence for such events.
It is possible to imagine how the geographical isolation between M. l. leucurus and M. l. amurensis could have been broken in the past. The supposed “contact zone” between them in the Amur Basin is quite wide (Fig. 3). A relatively small number of skulls with intermediate values of morphometric characters were found in the investigated sample, which could belong to the hybrids between M. l. leucurus and M. l. amurensis . It is also likely that M. l. leucurus has already penetrated in to the “original” range of M. l. amurensis in the Far East.
Conclusion
According to craniometric analysis, Far Eastern badgers differ significantly from Siberian M. l. leucurus and resemble Japanese M. anakuma in many parameters. At the same time, molecular data suggest that Japanese badgers are unique, while Far Eastern badgers are closer to Asian badgers from the Urals, Siberia and Tibet (Luo et al. 2016).
The analysis of palaeontological data suggests that Far Eastern badgers could have descended from the ancestral “ leucurus -like” badgers, which belonged to the M. leucurus chronospecies known since the mid-Early Pleistocene from China (Jiangzuo et al. 2018). This “ leucurus -like” badger dispersed westwards across south Siberia no later than at the MIS9 stage and evolved there into the modern M. leucurus . It is likely that the Far Eastern badgers retain some features of the ancestral form of both M. leucurus sensu stricto and M. anakuma . If this hypothesis is accepted, the Far Eastern badgers are to be treated as a separate species, Meles amurensis Schrenck, 1859 stat. rev.
The presumed range of the Far Eastern badger should extend east of the Great Khingan Ridge to Russian Primorye, Manchuria and the Korean peninsula. To test this hypothesis, additional material from the range of the species in China is required, including (re-)examination of recent and palaeontological material, both for morphological and whole-genome studies.
Acknowledgements
We wish to thank all curators of the museums for giving access to their collections. We are obliged to D.V. Logunov (Manchester) for linguistic help. We are grateful to the anonymous reviewers for helpful comments and suggestions for improving the original manuscript. The research was conducted as part of the Institute of Geography RAS State Assignment, Project No. FMWS-2024-0007, and Zoological Institute RAS State Assignment, Project No. 122031100282-2.
Supplementary materials
Supplementary Material 1
File S1
Puzachenko AY, Yudin VG, Abramov AV (2025)
Data Type : .pdf
Explanation notes
: The list of museums; Comments to the Materials and Methods section; List of libraries and functions of R packages used; Results of the estimation of the relevant number of clusters in the sample of M.leucurus and M.anakuma with crosstabulation results; Pearson’s correlations of theSZMandSHMcoordinates (E1, E3, K1 and K2) and raw measurements (Table S1); skull measurements (Tables S2, S3).
This dataset is made available under the Open Database License (http://opendatacommons.org/licenses/odbl/1.0). The Open Database License (ODbL) is a license agreement intended to allow users to freely share, modify, and use this dataset while maintaining this same freedom for others, provided that the original source and author(s) are credited.
Supplementary Material 2
File S2
Puzachenko AY, Yudin VG, Abramov AV (2025)
Data Type : .xlsx
Explanation notes
: List of the geographical locations of males (Table S4) and females (Table S5) of Asiatic badger ( M.leucurus ) and Japanese badger ( M.anakuna ) skulls used in the study and the different partitions of the sample based on morphospace coordinates (E1, E2, K1, K2).
This dataset is made available under the Open Database License (http://opendatacommons.org/licenses/odbl/1.0). The Open Database License (ODbL) is a license agreement intended to allow users to freely share, modify, and use this dataset while maintaining this same freedom for others, provided that the original source and author(s) are credited.
Supplementary Material 3
File S3
Puzachenko AY, Yudin VG, Abramov AV (2025)
Data Type : .xlsx
Explanation notes
: List of the Pleistocene-Holocene localities with remains of badgers Meles sp. (Table S6) and List of Early and Middle Pleistocene sites without Meles remains (Table S7).
This dataset is made available under the Open Database License (http://opendatacommons.org/licenses/odbl/1.0). The Open Database License (ODbL) is a license agreement intended to allow users to freely share, modify, and use this dataset while maintaining this same freedom for others, provided that the original source and author(s) are credited.
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Abstract
Four species of Eurasian badgers (Meles) are widely distributed across Eurasia. Small-sized and dark-coloured Far Eastern M. leucurus amurensis is the most distinctive form among all Asian badgers, M. leucurus. Traditionally, Far Eastern badgers are treated as a subspecies of the M. leucurus. This study aims to revise the geographical variability of the M. leucurus sensu lato from the entire species range (324 adult skulls) and assess the position of the Far Eastern badgers. In addition, 551 adult skulls of the European badger, M. meles, the Southwest Asian badger, M. canescens, and the Japanese badger, M. anakuma, were used for comparison with Asian badgers. Meles leucurus amurensis from the Far East resembles the Japanese M. anakuma in many respects, but is very different from the M. l. leucurus of southern Siberia and Middle Asia. Analysis of palaeontological data suggests that the Far Eastern badgers could have descended from the ancestral “ leucurus -like” badger chronospecies known from China since the mid-Early Pleistocene. It then probably dispersed westwards into southern Siberia no later than the MIS9 stage (~ 0.32 Ma), where it evolved into M. leucurus. Previous molecular data suggest that the Japanese badgers are unique, whereas the Far Eastern badgers are closer to Asian badgers from the Urals, Siberia and Tibet. We propose that the Far Eastern badger retains some craniometrics features of the ancestral form of M. leucurus sensu stricto and M. anakuma and should therefore be considered a separate species, M. amurensis Schrenck, 1859 stat. rev. The presumed range of this species is in the Far East, east of the Great Khingan Range to Russian Primorye, Manchuria and the Korean Peninsula and possibly eastern China.
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