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This dissertation explores the efficacy of special education services in public independent study schools, a growing yet under-researched segment of alternative education. As these schools provide flexible, individualized learning environments, it is critical to understand how they meet the unique needs of students with disabilities. The study examines the quality, accessibility, and outcomes of special education services through a mixed-methods approach. Key areas of focus include the implementation of Individualized Education Programs (IEPs), the extent of inclusion and collaboration among staff, and the adequacy of related services such as counseling, speech therapy, and occupational therapy. Findings reveal both strengths and challenges: while research report higher levels of student engagement and personalized support, resource limitations, inconsistent service delivery, and insufficient staff training were identified as barriers to full implementation of best practices. The study highlights significant variation in service quality depending on the size, structure, and leadership of the independent study program. Implications for policy and practice are discussed, including the need for targeted professional development, improved interagency coordination, and revised accountability measures that reflect the unique context of independent study settings. This research contributes to a deeper understanding of how special education services can be effectively adapted and delivered in alternative educational environments, and offers actionable recommendations for school leaders, policymakers, and practitioners committed to ensuring equity and access for all students.