Abstract

Mitochondrial dysfunction has been implicated in the etiology of monogenic Parkinson’s disease (PD). Yet the role that mitochondrial processes play in the most common form of the disease; sporadic PD, is yet to be fully established. Here, we comprehensively assessed the role of mitochondrial function-associated genes in sporadic PD by leveraging improvements in the scale and analysis of PD GWAS data with recent advances in our understanding of the genetics of mitochondrial disease. We calculated a mitochondrial-specific polygenic risk score (PRS) and showed that cumulative small effect variants within both our primary and secondary gene lists are significantly associated with increased PD risk. We further reported that the PRS of the secondary mitochondrial gene list was significantly associated with later age at onset. Finally, to identify possible functional genomic associations we implemented Mendelian randomization, which showed that 14 of these mitochondrial function-associated genes showed functional consequence associated with PD risk. Further analysis suggested that the 14 identified genes are not only involved in mitophagy, but implicate new mitochondrial processes. Our data suggests that therapeutics targeting mitochondrial bioenergetics and proteostasis pathways distinct from mitophagy could be beneficial to treating the early stage of PD.

Details

Title
Mitochondria function associated genes contribute to Parkinson’s Disease risk and later age at onset
Author
Billingsley, Kimberley J 1 ; Barbosa, Ines A 2 ; Bandrés-Ciga Sara 3 ; Quinn, John P 4 ; Bubb, Vivien J 4 ; Deshpande Charu 5 ; Botia, Juan A 6 ; Reynolds, Regina H 7   VIAFID ORCID Logo  ; Zhang, David 7 ; Simpson, Michael A 2 ; Blauwendraat Cornelis 3 ; Gan-Or Ziv 8 ; Raphael, Gibbs J 3 ; Nalls Mike A 9 ; Singleton, Andrew 3 ; Noyce, A 10 ; Tucci, A 11 ; Middlehurst, B 4 ; Kia, D 12 ; Tan, M 13 ; Houlden, H 11 ; Morris, H R 13 ; Plun-Favreau, H 11 ; Holmans, P 14 ; Hardy, J 11 ; Trabzuni, D 15 ; Bras, J 16 ; Mok, K 11 ; Kinghorn, K 17 ; Wood, N 12 ; Lewis, P 18 ; Guerreiro, R 19 ; Lovering, R 20 ; R’Bibo L 11 ; Rizig, M 11 ; Escott-Price, V 21 ; Chelban, V 11 ; Foltynie, T 7 ; Williams, N 22 ; Brice, A 23 ; Danjou, F 23 ; Lesage, S 23 ; Martinez, M 24 ; Giri, A 25 ; Schulte, C 25 ; Brockmann, K 25 ; Simón-Sánchez, J 25 ; Heutink, P 25 ; Rizzu, P 26 ; Sharma, M 27 ; Gasser, T 25 ; Nicolas, A 3 ; Cookson, M 3 ; Faghri, F 28 ; Hernandez, D 3 ; Shulman, J 29 ; Robak, L 30 ; Lubbe, S 31 ; Finkbeiner, S 32 ; Mencacci, N 33 ; Lungu, C 34 ; Scholz, S 35 ; Reed, X 3 ; Leonard, H 3 ; Rouleau, G 36 ; Krohan, L 37 ; van Hilten J 38 ; Marinus, J 38 ; Adarmes-Gómez, A 39 ; Aguilar, M 40 ; Alvarez, I 40 ; Alvarez, V 41 ; Javier Barrero F 42 ; Bergareche Yarza J 43 ; Bernal-Bernal, I 39 ; Blazquez, M 41 ; Bonilla-Toribio, Bernal M 39 ; Boungiorno, M 40 ; Buiza-Rueda Dolores 39 ; Cámara, A 44 ; Carcel, M 40 ; Carrillo, F 39 ; Carrión-Claro, M 39 ; Cerdan, D 45 ; Clarimón, J 46 ; Compta, Y 44 ; Diez-Fairen, M 40 ; Dols-Icardo, O 47 ; Duarte, J 45 ; Duran, R l 48 ; Escamilla-Sevilla, F 49 ; Ezquerra, M 44 ; Fernández, M 44 ; Fernández-Santiago, R 44 ; Garcia, C 41 ; García-Ruiz, P 50 ; Gómez-Garre, P 39 ; Gomez, Heredia M 51 ; Gonzalez-Aramburu, I 52 ; Gorostidi, Pagola A 43 ; Hoenicka, J 53 ; Infante, J 54 ; Jesús, S 39 ; Jimenez-Escrig, A 55 ; Kulisevsky, J 56 ; Labrador-Espinosa, M 39 ; Lopez-Sendon, J 55 ; de Munain Arregui A López 55 ; Macias, D 39 ; Martínez, Torres I 57 ; Marín, J 56 ; Jose, Marti M 44 ; Martínez-Castrillo, J 55 ; Méndez-del-Barrio, C 39 ; Menéndez, González M 39 ; Mínguez, A 49 ; Mir, P 39 ; Mondragon, Rezola E 43 ; Muñoz, E 44 ; Pagonabarraga, J 56 ; Pastor, P 40 ; Perez, Errazquin F 51 ; Periñán-Tocino, T 39 ; Ruiz-Martínez, J 43 ; Ruz, C 48 ; Sanchez, Rodriguez A 52 ; Sierra, M 52 ; Suarez-Sanmartin, E 5 ; Tabernero, C 55 ; Pablo, Tartari J 40 ; Tejera-Parrado, C 39 ; Tolosa, E 44 ; Valldeoriola, F 44 ; Vargas-González, L 39 ; Vela, L 58 ; Vives, F 48 ; Zimprich, A 59 ; Pihlstrom, L 60 ; Taba, P 61 ; Majamaa, K 62 ; Siitonen, A 63 ; Okubadejo, N 64 ; Ojo, O 64 ; Ryten Mina 7 ; Koks Sulev 65   VIAFID ORCID Logo 

 , University of Liverpool, Department of Molecular and Clinical Pharmacology, Institute of Translational Medicine, Liverpool, UK (GRID:grid.10025.36) (ISNI:0000 0004 1936 8470); National Institute on Aging, National Institutes of Health, Laboratory of Neurogenetics, Bethesda, USA (GRID:grid.419475.a) (ISNI:0000 0000 9372 4913) 
 King’s College London School of Basic and Medical Biosciences, Department of Medical and Molecular Genetics, London, UK (GRID:grid.13097.3c) (ISNI:0000 0001 2322 6764) 
 National Institute on Aging, National Institutes of Health, Laboratory of Neurogenetics, Bethesda, USA (GRID:grid.419475.a) (ISNI:0000 0000 9372 4913) 
 , University of Liverpool, Department of Molecular and Clinical Pharmacology, Institute of Translational Medicine, Liverpool, UK (GRID:grid.10025.36) (ISNI:0000 0004 1936 8470) 
 Guys and St. Thomas’ NHS Foundation Trust, Clinical Genetics Unit, London, UK (GRID:grid.420545.2) 
 Universidad de Murcia, Departamento de Ingeniería de la Información y las Comunicaciones, Murcia, Spain (GRID:grid.10586.3a) (ISNI:0000 0001 2287 8496); UCL Institute of Neurology, Department of Neurodegenerative Disease, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201) 
 UCL Institute of Neurology, Department of Neurodegenerative Disease, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201) 
 McGill University, Montreal Neurological Institute, Montréal, Canada (GRID:grid.14709.3b) (ISNI:0000 0004 1936 8649); McGill University, Department of Neurology and Neurosurgery, Montréal, Canada (GRID:grid.14709.3b) (ISNI:0000 0004 1936 8649); McGill University, Department of Human Genetics, Montréal, Canada (GRID:grid.14709.3b) (ISNI:0000 0004 1936 8649) 
 National Institute on Aging, National Institutes of Health, Laboratory of Neurogenetics, Bethesda, USA (GRID:grid.419475.a) (ISNI:0000 0000 9372 4913); Data Tecnica International, Glen Echo, USA (GRID:grid.419475.a) 
10  Wolfson Institute of Preventive Medicine, QMUL, Preventive Neurology Unit, London, UK (GRID:grid.4868.2) (ISNI:0000 0001 2171 1133) 
11  UCL Institute of Neurology, Department of Molecular Neuroscience, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201) 
12  UCL Institute of Neurology, UCL Genetics Institute; and Department of Molecular Neuroscience, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201) 
13  University College London, Department of Clinical Neuroscience, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201) 
14  MRC Centre for Neuropsychiatric Genetics & Genomics, Biostatistics & Bioinformatics Unit, Institute of Psychological Medicine and Clinical Neuroscience, Cardiff, UK (GRID:grid.83440.3b) 
15  UCL Institute of Neurology, Department of Molecular Neuroscience, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201); King Faisal Specialist Hospital and Research Centre, Department of Genetics, Riyadh, Saudi Arabia (GRID:grid.415310.2) (ISNI:0000 0001 2191 4301) 
16  UCL Institute of Neurology, UK Dementia Research Institute at UCL and Department of Molecular Neuroscience, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201) 
17  University College London, Institute of Healthy Ageing, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201) 
18  University of Reading, Reading, UK (GRID:grid.9435.b) (ISNI:0000 0004 0457 9566) 
19  UCL Institute of Neurology, Department of Molecular Neuroscience, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201); UCL Institute of Neurology, UK Dementia Research Institute at UCL and Department of Molecular Neuroscience, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201) 
20  University College London, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201) 
21  MRC Centre for Neuropsychiatric Genetics and Genomics, Cardiff, UK (GRID:grid.83440.3b); Cardiff University School of Medicine, Cardiff, UK (GRID:grid.5600.3) (ISNI:0000 0001 0807 5670) 
22  Cardiff University School of Medicine, Cardiff, UK (GRID:grid.5600.3) (ISNI:0000 0001 0807 5670) 
23  Institut du Cerveau et de la Moelle épinière, ICM, Inserm U 1127, CNRS, UMR 7225, Sorbonne Universités, UPMC University Paris 06, UMR S 1127, AP-HP, Pitié-Salpêtrière Hospital, Paris, France (GRID:grid.5600.3) 
24  INSERM UMR 1220; and Paul Sabatier University, Toulouse, France (GRID:grid.15781.3a) (ISNI:0000 0001 0723 035X) 
25  University of Tübingen, Department for Neurodegenerative Diseases, Hertie Institute for Clinical Brain Research, Tübingen, Germany (GRID:grid.10392.39) (ISNI:0000 0001 2190 1447); DZNE, German Center for Neurodegenerative Diseases, Tübingen, Germany (GRID:grid.424247.3) (ISNI:0000 0004 0438 0426) 
26  DZNE, German Center for Neurodegenerative Diseases, Tübingen, Germany (GRID:grid.424247.3) (ISNI:0000 0004 0438 0426) 
27  University of Tubingen, Centre for Genetic Epidemiology, Institute for Clinical Epidemiology and Applied Biometry, Tubingen, Germany (GRID:grid.10392.39) (ISNI:0000 0001 2190 1447) 
28  National Institute on Aging, National Institutes of Health, Laboratory of Neurogenetics, Bethesda, USA (GRID:grid.419475.a) (ISNI:0000 0000 9372 4913); University of Illinois at Urbana-Champaign, Department of Computer Science, Urbana, USA (GRID:grid.35403.31) (ISNI:0000 0004 1936 9991) 
29  Baylor College of Medicine, Departments of Neurology, Neuroscience, and Molecular & Human Genetics, Houston, USA (GRID:grid.39382.33) (ISNI:0000 0001 2160 926X); Texas Children’s Hospital, Jan and Dan Duncan Neurological Research Institute, Houston, USA (GRID:grid.416975.8) (ISNI:0000 0001 2200 2638) 
30  Baylor College of Medicine, Houston, USA (GRID:grid.39382.33) (ISNI:0000 0001 2160 926X) 
31  Northwestern University Feinberg School of Medicine, Ken and Ruth Davee Department of Neurology, Chicago, USA (GRID:grid.16753.36) (ISNI:0000 0001 2299 3507) 
32  University of California, Departments of Neurology and Physiology, San Francisco, USA (GRID:grid.266102.1) (ISNI:0000 0001 2297 6811); Gladstone Institute of Neurological Disease, San Francisco, USA (GRID:grid.249878.8) (ISNI:0000 0004 0572 7110); Taube/Koret Center for Neurodegenerative Disease Research, San Francisco, USA (GRID:grid.497581.6) 
33  Northwestern University Feinberg School of Medicine, Chicago, USA (GRID:grid.16753.36) (ISNI:0000 0001 2299 3507) 
34  National Institutes of Health Division of Clinical Research, NINDS, National Institutes of Health, Bethesda, USA (GRID:grid.416870.c) (ISNI:0000 0001 2177 357X) 
35  National Institute of Neurological Disorders and Stroke, Neurodegenerative Diseases Research Unit, Bethesda, USA (GRID:grid.416870.c) (ISNI:0000 0001 2177 357X) 
36  McGill University, Montreal Neurological Institute, Montréal, Canada (GRID:grid.14709.3b) (ISNI:0000 0004 1936 8649) 
37  McGill University, Department of Human Genetics, Montréal, Canada (GRID:grid.14709.3b) (ISNI:0000 0004 1936 8649) 
38  Leiden University Medical Center, Department of Neurology, Leiden, Netherlands (GRID:grid.10419.3d) (ISNI:0000000089452978) 
39  Instituto de Biomedicina de Sevilla (IBiS), Hospital Universitario Virgen del Rocío/CSIC/Universidad de Sevilla, Seville, Spain (GRID:grid.414816.e) (ISNI:0000 0004 1773 7922) 
40  University Hospital Mutua de Terrassa, Terrassa, Fundació Docència i Recerca Mútua de Terrassa and Movement Disorders Unit, Department of Neurology, Barcelona, Spain (GRID:grid.414875.b) (ISNI:0000 0004 1794 4956) 
41  Hospital Universitario Central de Asturias, Oviedo, Spain (GRID:grid.411052.3) (ISNI:0000 0001 2176 9028) 
42  Hospital Universitario Parque Tecnologico de la Salud, Granada, Spain (GRID:grid.418805.0) (ISNI:0000 0004 0500 8423) 
43  Instituto de Investigación Sanitaria Biodonostia, San Sebastián, Spain (GRID:grid.432380.e) 
44  Hospital Clinic de Barcelona, Barcelona, Spain (GRID:grid.410458.c) (ISNI:0000 0000 9635 9413) 
45  Hospital General de Segovia, Segovia, Spain (GRID:grid.415456.7) (ISNI:0000 0004 0630 5358) 
46  IIB Sant Pau, Hospital de la Santa Creu i Sant Pau, Universitat Autònoma de Barcelona, Memory Unit, Department of Neurology, Barcelona, Spain (GRID:grid.415456.7); Centro de Investigación Biomédica en Red en Enfermedades Neurodegenerativas (CIBERNED), Madrid, Spain (GRID:grid.413448.e) (ISNI:0000 0000 9314 1427) 
47  IIB Sant Pau, Hospital de la Santa Creu i Sant Pau, Universitat Autònoma de Barcelona, Memory Unit, Department of Neurology, Barcelona, Spain (GRID:grid.414875.b); Centro de Investigación Biomédica en Red en Enfermedades Neurodegenerativas (CIBERNED), Madrid, Spain (GRID:grid.413448.e) (ISNI:0000 0000 9314 1427) 
48  Universidad de Granada, Centro de Investigacion Biomedica, Granada, Spain (GRID:grid.4489.1) (ISNI:0000000121678994) 
49  Hospital Universitario Virgen de las Nieves, Instituto de Investigación Biosanitaria de Granada, Granada, Spain (GRID:grid.411380.f) (ISNI:0000 0000 8771 3783) 
50  Instituto de Investigación Sanitaria Fundación Jiménez Díaz, Madrid, Spain (GRID:grid.5515.4) (ISNI:0000000119578126) 
51  Hospital Universitario Virgen de la Victoria, Malaga, Spain (GRID:grid.411062.0) (ISNI:0000 0000 9788 2492) 
52  Hospital Universitario Marqués de Valdecilla-IDIVAL, Santander, Spain (GRID:grid.411325.0) (ISNI:0000 0001 0627 4262) 
53  Institut de Recerca Sant Joan de Déu, Barcelona, Spain (GRID:grid.432380.e) 
54  Centro de Investigación Biomédica en Red en Enfermedades Neurodegenerativas (CIBERNED), Madrid, Spain (GRID:grid.413448.e) (ISNI:0000 0000 9314 1427); Hospital Universitario Marqués de Valdecilla-IDIVAL, Santander, Spain (GRID:grid.411325.0) (ISNI:0000 0001 0627 4262) 
55  Hospital Universitario Ramón y Cajal Madrid, Madrid, Spain (GRID:grid.411347.4) (ISNI:0000 0000 9248 5770) 
56  Centro de Investigación Biomédica en Red en Enfermedades Neurodegenerativas (CIBERNED), Madrid, Spain (GRID:grid.413448.e) (ISNI:0000 0000 9314 1427); IIB Sant Pau, Hospital de la Santa Creu i Sant Pau, Universitat Autònoma de Barcelona, Movement Disorders Unit, Department of Neurology, Barcelona, Spain (GRID:grid.413448.e) 
57  Instituto de Investigación Sanitaria La Fe, Hospital Universitario y Politécnico La Fe, Department of Neurology, Valencia, Spain (GRID:grid.84393.35) (ISNI:0000 0001 0360 9602) 
58  Hospital Universitario Fundación Alcorcón, Department of Neurology, Madrid, Spain (GRID:grid.411316.0) (ISNI:0000 0004 1767 1089) 
59  Medical University of Vienna, Department of Neurology, Vienna, Austria (GRID:grid.22937.3d) (ISNI:0000 0000 9259 8492) 
60  Oslo University Hospital, Department of Neurology, Oslo, Norway (GRID:grid.55325.34) (ISNI:0000 0004 0389 8485) 
61  University of Tartu, Department of Neurology and Neurosurgery, Tartu, Estonia (GRID:grid.10939.32) (ISNI:0000 0001 0943 7661) 
62  University of Oulu, Institute of Clinical Medicine, Department of Neurology, Oulu, Finland (GRID:grid.10858.34) (ISNI:0000 0001 0941 4873); Oulu University Hospital, Department of Neurology and Medical Research Center, Oulu, Finland (GRID:grid.412326.0) (ISNI:0000 0004 4685 4917) 
63  University of Oulu, Institute of Clinical Medicine, Department of Neurology, Oulu, Finland (GRID:grid.10858.34) (ISNI:0000 0001 0941 4873) 
64  University of Lagos, Yaba, Nigeria (GRID:grid.411782.9) (ISNI:0000 0004 1803 1817) 
65  The Perron Institute for Neurological and Translational Science, Nedlands, Australia (GRID:grid.482226.8) (ISNI:0000 0004 0437 5686); Murdoch University, Centre for Comparative Genomics, Murdoch, Australia (GRID:grid.1025.6) (ISNI:0000 0004 0436 6763) 
Publication year
2019
Publication date
2019
Publisher
Nature Publishing Group
e-ISSN
23738057
Source type
Scholarly Journal
Language of publication
English
ProQuest document ID
2229260766
Copyright
© The Author(s) 2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.