Hybrid genome assembly and annotation of Danionella translucida

Abstract

Studying neuronal circuits at cellular resolution is very challenging in vertebrates due to the size and optical turbidity of their brains. Danionella translucida, a close relative of zebrafish, was recently introduced as a model organism for investigating neural network interactions in adult individuals. Danionella remains transparent throughout its life, has the smallest known vertebrate brain and possesses a rich repertoire of complex behaviours. Here we sequenced, assembled and annotated the Danionella translucida genome employing a hybrid Illumina/Nanopore read library as well as RNA-seq of embryonic, larval and adult mRNA. We achieved high assembly continuity using low-coverage long-read data and annotated a large fraction of the transcriptome. This dataset will pave the way for molecular research and targeted genetic manipulation of this novel model organism.

Alternate abstract:

Design Type(s)sequence assembly objective • sequence annotation objective • transcription profiling designMeasurement Type(s)transcription profiling assay • genomeTechnology Type(s)RNA sequencing • DNA sequencingFactor Type(s)ageSample Characteristic(s)Danionella translucida • whole body

Machine-accessible metadata file describing the reported data (ISA-Tab format)