Specimen self-collection for SARS-CoV-2 testing: Patient performance and preferences—Atlanta, Georgia, August-October 2020

Abstract

Self-collected specimens can expand access to SARS-CoV-2 testing. At a large inner-city hospital 1,082 participants self-collected saliva and anterior nasal swab (ANS) samples before healthcare workers collected nasopharyngeal swab (NPS) samples on the same day. To characterize patient preferences for self-collection, this investigation explored ability, comfort, and ease of ANS and saliva self-collection for SARS-CoV-2 testing along with associated patient characteristics, including medical history and symptoms of COVID-19. With nearly all participants successfully submitting a specimen, favorable ratings from most participants (at least >79% in ease and comfort), and equivocal preference between saliva and ANS, self-collection is a viable SARS-CoV-2 testing option.

About the Authors:

Kevin O’Laughlin

Roles Data curation, Formal analysis, Investigation, Methodology, Writing – original draft, Writing – review & editing

* E-mail: [email protected]

Affiliations COVID-19 Emergency Response, Centers for Disease Control and Prevention, Atlanta, GA, United States of America, Epidemic Intelligence Service, CDC, Atlanta, GA, United States of America

ORCID logo https://orcid.org/0000-0001-9484-683X

Catherine C. Espinosa

Roles Investigation, Writing – review & editing

Affiliation: COVID-19 Emergency Response, Centers for Disease Control and Prevention, Atlanta, GA, United States of America

ORCID logo https://orcid.org/0000-0003-3883-0635

Sarah E. Smith-Jeffcoat

Roles Conceptualization, Investigation, Writing – review & editing

Affiliation: COVID-19 Emergency Response, Centers for Disease Control and Prevention, Atlanta, GA, United States of America

Mitsuki Koh

Roles Data curation, Investigation, Validation

Affiliation: COVID-19 Emergency Response, Centers for Disease Control and Prevention, Atlanta, GA, United States of America

George M. Khalil

Roles Formal analysis, Investigation

Affiliation: COVID-19 Emergency Response, Centers for Disease Control and Prevention, Atlanta, GA, United States of America

ORCID logo https://orcid.org/0000-0002-0996-0310

Adam Hoffman

Roles Investigation

Affiliations Grady Memorial Hospital, Atlanta, GA, United States of America, Emory University Atlanta, Atlanta, GA, United States of America

ORCID logo https://orcid.org/0000-0002-0885-3900

Paulina A. Rebolledo

Roles Conceptualization

Affiliation: Emory University Atlanta, Atlanta, GA, United States of America

Marcos C. Schechter

Roles Conceptualization, Investigation, Supervision

Affiliations Grady Memorial Hospital, Atlanta, GA, United States of America, Emory University Atlanta, Atlanta, GA, United States of America

ORCID logo https://orcid.org/0000-0002-6165-7423

Rebekah J. Stewart

Roles Conceptualization, Writing – review & editing

Affiliation: COVID-19 Emergency Response, Centers for Disease Control and Prevention, Atlanta, GA, United States of America

ORCID logo https://orcid.org/0000-0002-2620-412X

Juliana da Silva

Roles Conceptualization, Investigation, Project administration, Writing – review & editing

Affiliation: COVID-19 Emergency Response, Centers for Disease Control and Prevention, Atlanta, GA, United States of America

Caitlin Biedron

Roles Investigation

Affiliation: COVID-19 Emergency Response, Centers for Disease Control and Prevention, Atlanta, GA, United States of America

Bettina Bankamp

Roles Investigation

Affiliation: COVID-19 Emergency Response, Centers for Disease Control and Prevention, Atlanta, GA, United States of America

Jennifer Folster

Roles Investigation

Affiliation: COVID-19 Emergency Response, Centers for Disease Control and Prevention, Atlanta, GA, United States of America

Amy S. Gargis

Roles Investigation

Affiliation: COVID-19 Emergency Response, Centers for Disease Control and Prevention, Atlanta, GA, United States of America

ORCID logo https://orcid.org/0000-0001-5854-2636

Michael D. Bowen

Roles Investigation

Affiliation: COVID-19 Emergency Response, Centers for Disease Control and Prevention, Atlanta, GA, United States of America

Ashley Paulick

Roles Investigation

Affiliation: COVID-19 Emergency Response, Centers for Disease Control and Prevention, Atlanta, GA, United States of America

ORCID logo https://orcid.org/0000-0001-6796-4355

Yun F. Wang

Roles Conceptualization, Investigation

Affiliations Grady Memorial Hospital, Atlanta, GA, United States of America, Emory University Atlanta, Atlanta, GA, United States of America

Jacqueline E. Tate

Roles Conceptualization, Investigation, Methodology, Supervision, Writing – review & editing

Affiliation: COVID-19 Emergency Response, Centers for Disease Control and Prevention, Atlanta, GA, United States of America

Hannah L. Kirking

Roles Conceptualization, Investigation, Methodology, Supervision, Writing – review & editing

Affiliation: COVID-19 Emergency Response, Centers for Disease Control and Prevention, Atlanta, GA, United States of America

CDC Surge Diagnostic Testing Laboratory

¶Membership of the CDC Surge Diagnostic Testing Laboratory, CDC COVID-19 Emergency Response GA-10 Field Team listed in the Acknowledgments.

CDC COVID-19 Emergency Response GA-10 Field Team

¶Membership of the CDC Surge Diagnostic Testing Laboratory, CDC COVID-19 Emergency Response GA-10 Field Team listed in the Acknowledgments.

Introduction

As the COVID-19 pandemic continues into a second year [1], accessible SARS-CoV-2 testing is important for resuming in-person activities such as medical care [2], travel [3], and school attendance [4]. Nasopharyngeal swab (NPS) testing has been the standard for SARS-CoV-2 detection, but non-nasopharyngeal specimens have shown similar sensitivity when compared to NPS [5–7]. With ongoing shortages of personal protective equipment (PPE) and swabbing materials, exploration of non-nasopharyngeal SARS-CoV-2 testing modalities, such as saliva, is critical for reducing health care worker exposures and the burden on healthcare resources [8–10]; self-collection of these specimens could further lessen that burden. Previous studies have demonstrated the public’s reported willingness to self-collect specimens [11], and the preference of nasal mid-turbinate or saliva collection compared to NPS [12, 13]. Limited data are available on the self-collection experience and preferences associated with demographics and symptoms. To further characterize patient preferences for self-collection, this investigation explored ability, and comfort and ease of anterior nasal swab (ANS) and saliva self-collection for SARS-CoV-2 along with associated patient characteristics, including medical history and symptoms of COVID-19.

Methods

This analysis used data collected as part of a cross-sectional investigation comparing performance of self-collected saliva and ANS to healthcare worker-collected NPS on the same day from patients at Grady Memorial Hospital in Atlanta, GA, as previously described [14]. Briefly, patients were eligible if a SARS-CoV-2 reverse transcription-polymerase chain reaction (RT-PCR) test by NPS was ordered by the treating clinician. Patients were excluded if unable to consent, <18 years old, unable to self-collect both specimens, or an NPS was contraindicated. A trained interviewer used a standard questionnaire to collect participant demographics, medical history, and symptoms (S1 File). Medical conditions that may affect dexterity were defined as: arthritis (including osteoarthritis and unspecified type), multiple sclerosis, cerebral palsy, and carpal tunnel syndrome. Participants were able to add any other medical condition as ‘other’.

Participants self-collected saliva and ANS using standardized infographics for instructions (Fig 1A and 1B). Saliva was collected in a sterile 50 mL conical centrifuge tube. For ANS collection, participants inserted one mini flocked tip swab into both anterior nares and twirled for 15 seconds in each naris. Participants rated the collection comfort either positively (very comfortable or comfortable) or negatively (uncomfortable or very uncomfortable) and ease either positively (very easy or easy) or negatively (difficult or very difficult) for each self-collected specimen, and overall preference for specimen collection type. Successful self-collection was defined as a sample collected from a participant that was not rejected by the lab. An unfavorable rating was defined as at least one negative rating by a participant from the categories of very uncomfortable/uncomfortable or very difficult/difficult. After self-collection and interview, an NPS was collected by hospital clinicians. Participants were compensated with a $25 gift card. All specimens were tested at Centers for Disease Control and Prevention (CDC) using the CDC 2019-nCoV RT-PCR Diagnostic Panel [15]. All data were entered and stored in a REDCap database (v10.0.8, Vanderbilt University, Nashville, TN) hosted at CDC. SAS (version 9.4; SAS Institute) was used to conduct all analyses. Ease and comfort data were analyzed categorically. RT-PCR results of self-collected specimens were matched to NPS result to assess concordance. Chi-square tests were used to determine statistical significance of bivariate associations; an alpha of 0.05 was considered significant. T-tests were performed for continuous variables. This investigation was reviewed by CDC and conducted consistent with applicable federal law and CDC policy (See e.g., 45 C.F.R. part 46, 21 C.F.R. part 56; 42 U.S.C. 241(d); 5 U.S.C. 552a; 44 U.S.C. 3501 et seq.). It was determined to be an exempt public health activity by the Emory University Institutional Review Board and Grady Memorial Hospital Research Oversight Committee.

[Figure omitted. See PDF.]

Fig 1.

Saliva (A) and anterior nasal swab (B) self-collection instructional sheet handed to participants at Grady Memorial Hospital—Atlanta, GA, August–November 2020.

https://doi.org/10.1371/journal.pone.0264085.g001

Results

Among 1082 participants, 47.8% were female, mean age was 50 years (IQR 38–61), 81.1% were non-Hispanic Black, 80.9% reported an underlying medical condition associated with severe COVID-19 outcomes [15], and 18.1% reported concern for having COVID-19. Eighty percent (n = 866) were enrolled from the emergency department, 18.6% (n = 201) from the pre-operative screening clinic, and 1.4% (n = 15) from the Labor and Delivery department (Table 1). In the emergency department, 76.0% of participants reported at least one symptom consistent with COVID-19, compared to just 18.9% in the pre-procedure screening clinic. Concordance of RT-PCR results between self-collected specimens and healthcare-collected NPS was not associated with preference or ease/comfort ratings (S1 Data).

[Figure omitted. See PDF.]

Table 1. Characteristics and reported symptoms of participants who contributed self-collected saliva and anterior nasal swabs for SARS-CoV-2 detection by RT-PCR at Grady Memorial Hospital—Atlanta, GA, August–October 2020.

https://doi.org/10.1371/journal.pone.0264085.t001

Overall, 48.5% of participants preferred saliva collection (over ANS), 42.7% preferred ANS (over saliva), and 4.5% had no preference between the two self-collected samples (Table 2). Saliva was preferred more often by those who were immunocompromised (64.4%, p = 0.03). In contrast, those with neurological disorders preferred ANS (55.8%, p = 0.05). Among 205 participants rating saliva self-collection unfavorably, more were experiencing symptoms compared to those rating saliva favorably (65.9% vs. 53.9%; p<0.01), specifically led by nausea (29.3% versus 20.8% p<0.01), cough (48.3% versus 38.4%, p<0.01), and shortness of breath (49.3% versus 39.4%, p<0.01). This group of 205 was also overrepresented in the emergency department (87.8% versus 78.1%, p<0.01) and had a higher proportion of reported history of lung disease (COPD/emphysema or asthma) (33.2% versus 23.7%; p<0.01) compared to those with favorable ratings. The 242 participants who rated ANS unfavorably reported nausea within 14 days of testing more often than those who rated collection favorably (27.7% versus 21.1%, p = 0.03); this group also reported a higher proportion of lung disease (31.4% versus 23.9%%; p = 0.02). Complete ease and comfort ratings are presented in Table 3. Most participants rated saliva and ANS self-collection positively (Saliva: 87.7% very easy/easy and 86.6% very comfortable/comfortable; ANS: 91.8% very easy/easy and 79.0% very comfortable/comfortable).

[Figure omitted. See PDF.]

Table 2. Participant preference and favorability rating* for self-collected saliva and anterior nasal swabs by location, reported demographics, symptoms and underlying medical history, Grady Memorial Hospital, Atlanta, GA, August–October 2020.

https://doi.org/10.1371/journal.pone.0264085.t002

[Figure omitted. See PDF.]

Table 3. Ease and comfort ratings of participants who contributed saliva and anterior nasal swabs for SARS-CoV-2 detection by RT-PCR at Grady Memorial Hospital—Atlanta, GA, August–October 2020.

https://doi.org/10.1371/journal.pone.0264085.t003

Nearly all participants were able to provide a sufficient saliva (95.5%) and ANS (99.4%) specimen for testing (Table 4). Sixteen (1.5%) participants were unable to collect saliva and three (0.3%) were unable to provide ANS samples. An additional 29 saliva samples were rejected for: improper storage (n = 27), and leakage (n = 2). Two ANS samples were rejected for improper storage. Thirty saliva samples (2.8%) had insufficient volume for testing; these participants were more often older (mean age 56.3 years versus 49.5 years, p = 0.02), women (63.3% versus 47.5%, p = 0.09), and self-reported having chronic kidney disease (16.7% versus 6.9%, p = 0.04) than their counterparts (Table 5). They did not have a higher proportion of dexterity impairment (0% versus 2.1%, p = 0.42) or neurological disorders (14.3% versus 10.2%, p = 0.48). Stratification of the 60+ age group did not show significant differences in preference, ratings, or ability (Supplemental data).

[Figure omitted. See PDF.]

Table 4. Participant performance of ability to self-collect saliva and anterior nasal swabs for SARS-CoV-2 detection by RT-PCR at Grady Memorial Hospital—Atlanta, GA, August–October 2020.

https://doi.org/10.1371/journal.pone.0264085.t004

[Figure omitted. See PDF.]

Table 5. Characteristics of participants unable to provide sufficient volume of self-collected saliva for SARS-CoV-2 detection by RT-PCR at Grady Memorial Hospital—Atlanta, GA, August–October 2020.

https://doi.org/10.1371/journal.pone.0264085.t005

Discussion

This investigation found that self-collected specimens for SARS-CoV-2 testing were an acceptable option to participants; nearly all were able to provide self-collected saliva and ANS specimens and rated the experience favorably in at least one category. High collection success rates indicate that no person should be automatically excluded from public health self-collection programs based solely on demographic factors. Those with potential dexterity impairment, including neurological disorders or arthritis, were just as likely to have success with self-collection. Importantly for reaching those disproportionally affected by the COVID-19 pandemic, this investigation was conducted in a public hospital and included many participants at increased risk for severe COVID-19 disease [16–18].

Since instructions for self-collection were given in written infographic format and did not rely on interviewers or healthcare personnel for teaching, self-collection testing programs need not be limited to healthcare settings. Self-collection testing could therefore potentially preserve valuable healthcare resources, including facilities, personnel, and PPE. Additionally, higher favorable ratings for both self-collected specimen types in asymptomatic individuals and those in pre-procedure screening suggest that self-collected specimens might be even more favorable in screening programs compared to clinical, diagnostic testing situations. Notably, although our study used SARS-CoV-2 RT-PCR testing, ANS are included as approved specimens for several SARS-CoV-2 antigen tests with Emergency Use Authorizations approved by the US Food and Drug Administration. The ability to screen with self-collected rapid antigen tests is an important tool for expanding access to testing, especially for situations where frequent testing has been proposed, such as in school settings [19, 20]. Self-tests are also now part of CDC’s risk reduction strategy along with other mitigation efforts [21]. Further studies can explore specifics to this approach by investigating modality preferences and the reasons behind those preferences for particular demographics, underlying medical conditions, or settings.

The very small subset of participants with difficulty providing saliva were older and possibly in poorer health; they were however able to provide ANS specimens, so offering both modalities in a testing program for this population, such as in a nursing home, might increase successful participation. Saliva was the preferred method of self-collection by a small margin; those with neurological disorders were the only group with a statistically significant preference for ANS. When attempting to broaden access with a self-collected specimen diagnostic program, either self-collection modality would likely be similarly acceptable in many settings, given the almost equal preference between the two.

This investigation has several limitations. First, despite written infographics being the main source of instruction, interviewers were present and an element of bedside manner or outside coaching may have contributed to ratings and preferences; therefore the experience may not translate from this element of interviewer presence to true unsupervised self-collection. Second, language translation services and Spanish instructional handouts were used, but communication difficulties (i.e., vision/hearing impairment, limited English proficiency) were not assessed; these may have affected understanding of the instructional handout despite being mostly pictorial. Third, 50 milliliter conical centrifuge tubes were used for saliva collection. These have a narrow mouth, which may have affected saliva-collection ratings. Fourth, the diagnostic performance report of this same investigation demonstrated that the self-collected saliva and ANS specimens had overall lower sensitivity than NPS specimens (saliva and ANS had sensitivities of 68% (95%CI: 55–78%), and 59% (95%CI: 47–70%), respectively) [14], which may limit application. The source of sensitivity limitations is discussed extensively in the aforementioned report. Fifth, all medical histories and symptoms were self-reported and may be subject to recall bias. Sixth, the categorical scale used to assess comfort and ease may have limited the ability to determine small differences between the two testing modalities. Future investigations that collect explanations of chosen ratings could help to explore why certain participants favored one specimen over another. Last, most participants were recruited from an emergency department in a large urban area and may not be representative of other communities in the United States.

Accessible SARS-CoV-2 diagnostic testing is important for routine patient care and resumption of in-person activities, and self-collected specimens can help expand access while reducing personnel and resource burdens on the healthcare system.

Supporting information

S1 File. Survey instrument for data collection at Grady Memorial Hospital—Atlanta, GA, August–November 2020.

https://doi.org/10.1371/journal.pone.0264085.s001

(PDF)

S1 Data. Dataset for data collection at Grady Memorial Hospital—Atlanta, GA, August–November 2020.

https://doi.org/10.1371/journal.pone.0264085.s002

(XLSX)

Acknowledgments

We are grateful to Vyjayanti Kasinathan, MD, for all her work aliquoting the NPS at Grady for CDC testing. We thank Francisco Averhoff (CDC), Nicolas Wiese (CDC), Luis Lowe (CDC), and Susan Ray (Emory University) for feedback on the initial concept development. We thank Hany Atallah (Grady Memorial Hospital) and Brooks L. Moore (Grady Memorial Hospital) for their approval and support to recruit from Grady Memorial Hospital and Gerardo Garcia-Lerma (CDC), Lauren Franco (CDC), Anupama Shankar (CDC), Adam Wharton (CDC), and Tiffiany M. Aholou (CDC) for their logistical and field support. We are grateful to the Grady Memorial Hospital clinicians who supported our efforts throughout this study. We want to thank the CDC COVID-19 Surge Laboratory for specimen extraction and SARS-CoV-2 rRT-PCR testing. We thank Katherine Butler, Caitlin D. Bohannon, D. Joseph Sexton, Laura Hughes-Baker, Wendi Kuhnert-Tallman, Brandi Limbago, and Christopher Elkins for their leadership and support from the Laboratory and Testing Task Force of the CDC COVID-19 Response. We are grateful to the study’s participants for their time and contributions, making this study possible.

CDC Surge Diagnostic Testing Laboratory: Raydel Anderson, Kay W. Radford, Gimin Kim, Dexter Thompson, Congrong Miao, Min-hsin Chen, Claire Hartloge, Magdalena Medrzycki, Patricia Shewmaker, Brent Jenkins, Nhien Tran, Srinivasan Velusamy, Lalitha Gade, Kashif Sahibzada, Renee Galloway, Phili Wong, HaoQiang Zheng, Michelle Adamczyk, Erin Breaker, Davina Campbell, Lori Spicer, Lisa Tran, William Furin, Carrie A. Sanders, K. Allison Perry-Dow, Monica Chan, Amanda Lyons, Hollis Houston, Karlos Crayton, J. Carrie Whitworth, Gillian McAllister, Alison L. Halpin, Natashia R. Reese, Kamile Rasheed, David R. Lonsway, Uzma A. Ansari, Amelia Bhatnagar, Rocio Balbuena, Maria Karlsson, M. Shannon Keckler, Baoming Jiang, Jan Vinje, Leslie Barclay, Rashi Gautam, Slavica Mijatovic-Rustempasic, Amy Hopkins, Eric Katz, Hannah Browne, Kenny Nguyen, Mathew Esona, Sung-Sil Moon, Theresa Bessey, Preeti Chhabra, Leeann Smart

CDC COVID-19 Emergency Response GA-10 Field Team: Mila Cohen, Talya Shragai, Amadea Britton, Courtney T. Callahan, Jamila Fonseka, Elfriede Agyemang, Miriam Lawson, Molly Deutsch-Feldman, Tejpratap S. P. Tiwari, Samira Sami, Hong Tao, Tiffany M. Aholou, Halie K. Miller, Sadia Sleweon, Rebecca Rossetti, Anne Moorman, Brenda Bauman, Kahaliah Joseph, Michelle O’Hegarty, Nazia Kamal.

Disclaimer: The findings and conclusions in this report are those of the authors and do not necessarily represent the official position of the Centers for Disease Control and Prevention.

Citation: O’Laughlin K, Espinosa CC, Smith-Jeffcoat SE, Koh M, Khalil GM, Hoffman A, et al. (2022) Specimen self-collection for SARS-CoV-2 testing: Patient performance and preferences—Atlanta, Georgia, August-October 2020. PLoS ONE 17(3): e0264085. https://doi.org/10.1371/journal.pone.0264085

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