Abstract

Rheumatoid arthritis (RA) is a chronic inflammatory disorder with poorly defined aetiology characterised by synovial inflammation with variable disease severity and drug responsiveness. To investigate the peripheral blood immune cell landscape of early, drug naive RA, we performed comprehensive clinical and molecular profiling of 267 RA patients and 52 healthy vaccine recipients for up to 18 months to establish a high quality sample biobank including plasma, serum, peripheral blood cells, urine, genomic DNA, RNA from whole blood, lymphocyte and monocyte subsets. We have performed extensive multi-omic immune phenotyping, including genomic, metabolomic, proteomic, transcriptomic and autoantibody profiling. We anticipate that these detailed clinical and molecular data will serve as a fundamental resource offering insights into immune-mediated disease pathogenesis, progression and therapeutic response, ultimately contributing to the development and application of targeted therapies for RA.

Measurement(s)

Transcriptomics, small RNA, proteomics, autoantibodies, metabolomics, genotype, blood, urine

Technology Type(s)

 microarray, RNA sequencing, somascan, NMR metabolomics, luminex autoantibody array, exome array  

Sample Characteristic - Organism

Homo sapiens

Details

Title
RA-MAP, molecular immunological landscapes in early rheumatoid arthritis and healthy vaccine recipients
Author
Isaacs, John D 1   VIAFID ORCID Logo  ; Brockbank, Sarah 1 ; Pedersen, Ayako Wakatsuki 1 ; Hilkens Catharien 1 ; Anderson, Amy 1 ; Stocks, Philip 1 ; Lendrem Dennis 1 ; Tarn, Jessica 1 ; Smith, Graham R 2 ; Allen, Ben 2 ; Casement, John 2 ; Diboll, Julie 1 ; Harry, Rachel 1 ; Cooles Faye A H 1 ; Cope, Andrew P 3 ; Simpson, Gemma 3 ; Toward Ruth 3 ; Noble, Hayley 3 ; Parke, Angela 3 ; Wu, Wing 3 ; Clarke, Fiona 3 ; Scott, David 3 ; Scott, Ian C 3 ; Galloway, James 3 ; Lempp, Heidi 3 ; Ibrahim Fowzia 3 ; Schwank Samana 3 ; Molyneux Gemma 3 ; Lazarov Tomi 4 ; Geissmann Frederic 4 ; Goodyear, Carl S 5   VIAFID ORCID Logo  ; McInnes, Iain B 5 ; Donnelly, Iona 5 ; Gilmour, Ashley 5 ; Virlan Aysin Tulunay 5 ; Porter, Duncan 6 ; Ponchel Frederique 7 ; Emery, Paul 7 ; El-Jawhari, Jehan 7 ; Parmar Rekha 7 ; McDermott, Michael F 7   VIAFID ORCID Logo  ; Fisher, Benjamin A 8 ; Young, Steve P 8 ; Jones, Philip 8 ; Raza Karim 9 ; Filer, Andrew 8 ; Pitzalis Costantino 10 ; Barnes, Michael R 11   VIAFID ORCID Logo  ; Watson, David S 11 ; Henkin, Rafael 11 ; Thorborn Georgina 10 ; Fossati-Jimack Liliane 10   VIAFID ORCID Logo  ; Kelly, Stephen 10 ; Humby Frances 10 ; Bombardieri Michele 10 ; Rana Sharmila 12 ; Jia Zhilong 11 ; Goldmann Katriona 12 ; Lewis, Myles 10 ; Ng, Sandra 11 ; Barbosa-Silva, Adriano 11 ; Tzanis Evan 11 ; Gallagher-Syed, Amaya 11   VIAFID ORCID Logo  ; John, Christopher R 13 ; Ehrenstein, Michael R 14   VIAFID ORCID Logo  ; Altobelli Gioia 14 ; Martins, Sandra 14 ; Nguyen, Dao 14 ; Humayara, Ali 14 ; Coziana, Ciurtin 14 ; Buch, Maya 15 ; Symmons, Deborah 15 ; Worthington, Jane 15 ; Bruce, Ian N 15 ; Sergeant, Jamie C 15 ; Verstappen Suzanne M M 15 ; Stirling, Fiona 15 ; Hughes-Morley, Adwoa 15 ; Tom, Brian 16 ; Farewell Vernon 16 ; Zhong Yujie 16 ; Taylor, Peter C 17 ; Buckley, Christopher D 17   VIAFID ORCID Logo  ; Keidel, Sarah 18 ; Cuff, Carolyn 19 ; Levesque, Marc 20 ; Long, Andrew 21 ; Liu, Zheng 19 ; Lipsky, Samantha 22 ; Harvey, Bohdan 23 ; Macoritto, Michael 19 ; Feng, Hong 24 ; Kaymakcalan Sukru 23 ; Tsuji, Wayne 25 ; Sabin, Tony 25 ; Ward, Neil 25 ; Talbot, Susan 25 ; Padhji Desmond 25 ; Sleeman, Matthew 26 ; Finch, Donna 26 ; Herath Athula 26 ; Lindholm Catharina 27 ; Jenkins, Martin 27 ; Ho Meilien 27 ; Hollis, Sally 27 ; Marshall, Chris 27 ; Parker, Gerry 28 ; Page, Matt 28 ; Edwards, Hannah 28 ; Cuza Alexandru 28 ; Gozzard Neil 28 ; Pandis Ioannis 29 ; Rowe, Anthony 30   VIAFID ORCID Logo  ; Capdevila, Francisco Bonachela 31 ; Loza, Matthew J 30 ; Curran, Mark 30 ; Verbeeck Denny 31 ; Baker, Dan 30 ; Mela, Christopher M 32 ; Vranic Ivana 32 ; Mela, Catherine T 32 ; Wright, Stephen 32 ; Rowell, Lucy 32 ; Vernon, Emma 32 ; Joseph, Nina 32 ; Payne, Neil 32 ; Rao, Ravi 33 ; Binks, Michael 33 ; Belson, Alexandra 33 ; Ludbrook, Valerie 33 ; Hicks, Kirsty 33 ; Tipney Hannah 33 ; Ellis, Joanne 33 ; Samiul, Hasan 33 ; Didierlaurent Arnaud 33 ; Burny Wivine 33 ; Haynes, Andrea 33 ; Larminie, Chris 33 ; Harris, Ray 34 ; Dastros-Pitei Daniela 34 ; Carini, Claudio 35 ; Kola Blerina 36 ; Jelinsky, Scott 35 ; Hodge, Martin 35 ; Maciejewski Mateusz 35 ; Ziemek, Daniel 35 ; Schulz-Knappe, Peter 37 ; Hans-Dieter, Zucht 37 ; Budde Petra 37 ; Coles, Mark 38 ; Butler, James A 39 ; Read, Simon 40 

 Translational & Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, UK (GRID:grid.1006.7) (ISNI:0000 0001 0462 7212); Musculoskeletal Unit, Newcastle upon Tyne Hospitals NHS Foundation Trust, Newcastle upon Tyne, UK (GRID:grid.420004.2) (ISNI:0000 0004 0444 2244) 
 Newcastle University, Bioinformatics Support Unit, Faculty of Medical Sciences, Newcastle Upon Tyne, UK (GRID:grid.1006.7) (ISNI:0000 0001 0462 7212) 
 King’s College London, Academic Department of Rheumatology, Division of Immunology, Infection and Inflammatory Disease, Faculty of Life Sciences, London, UK (GRID:grid.13097.3c) (ISNI:0000 0001 2322 6764) 
 King’s College London, Department of Immunobiology, Division of Immunology, Infection and Inflammatory Disease, Faculty of Life Sciences, London, UK (GRID:grid.13097.3c) (ISNI:0000 0001 2322 6764) 
 University of Glasgow, Institute of Infection, Immunity and Inflammation, College of Medical, Veterinary and Life Sciences, Glasgow, UK (GRID:grid.8756.c) (ISNI:0000 0001 2193 314X) 
 Gartnavel General Hospital, Glasgow, UK (GRID:grid.415302.1) (ISNI:0000 0000 8948 5526) 
 The University of Leeds, Leeds Institute of Rheumatic and Musculoskeletal Medicine (LIRMM), School of Medicine, and the Leeds NIHR Biomedical Research Centre, Leeds, UK (GRID:grid.9909.9) (ISNI:0000 0004 1936 8403) 
 University of Birmingham and University Hospitals Birmingham NHS Trust and Sandwell and West Birmingham Hospitals NHS Trust, Birmingham, UK (GRID:grid.412919.6) 
 University of Birmingham and Sandwell and West Birmingham Hospitals NHS Trust, Birmingham, UK (GRID:grid.412919.6) 
10  Queen Mary University of London, Centre for Experimental Medicine and Rheumatology, William Harvey Research Institute, Faculty of Medicine and Dentistry, London, UK (GRID:grid.4868.2) (ISNI:0000 0001 2171 1133) 
11  Queen Mary University of London, Centre for Translational Bioinformatics, William Harvey Research Institute, Faculty of Medicine and Dentistry, London, UK (GRID:grid.4868.2) (ISNI:0000 0001 2171 1133) 
12  Queen Mary University of London, Centre for Experimental Medicine and Rheumatology, William Harvey Research Institute, Faculty of Medicine and Dentistry, London, UK (GRID:grid.4868.2) (ISNI:0000 0001 2171 1133); Queen Mary University of London, Centre for Translational Bioinformatics, William Harvey Research Institute, Faculty of Medicine and Dentistry, London, UK (GRID:grid.4868.2) (ISNI:0000 0001 2171 1133) 
13  Queen Mary University of London, Centre for Experimental Medicine and Rheumatology, William Harvey Research Institute, Faculty of Medicine and Dentistry, London, UK (GRID:grid.4868.2) (ISNI:0000 0001 2171 1133); University College London, Division of Medicine, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201) 
14  University College London, Division of Medicine, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201) 
15  University of Manchester, Centre for Musculoskeletal Research, NIHR Manchester Biomedical Research Centre, School of Biological Sciences, Faculty of Biology, Medicine and Health, Manchester, UK (GRID:grid.5379.8) (ISNI:0000000121662407) 
16  University of Cambridge, MRC Biostatistics Unit, Cambridge, UK (GRID:grid.5335.0) (ISNI:0000000121885934) 
17  University of Oxford, The Kennedy Institute of Rheumatology, Oxford, UK (GRID:grid.4991.5) (ISNI:0000 0004 1936 8948) 
18  Abbvie Ltd, Medical Affairs, Maidenhead, UK (GRID:grid.476021.6) (ISNI:0000 0004 1797 2869) 
19  AbbVie Bioresearch Center Inc, Translational Immunology, Worcester, USA (GRID:grid.431072.3) (ISNI:0000 0004 0572 4227) 
20  Abbvie Bioresearch Center Inc, Immunology Clinical Development, Worcester, USA (GRID:grid.431072.3) (ISNI:0000 0004 0572 4227) 
21  AbbVie Bioresearch Center Inc, Immunology Pharmacology, Worcester, USA (GRID:grid.431072.3) (ISNI:0000 0004 0572 4227) 
22  AbbVie Bioresearch Center Inc, Information Research, Worcester, USA (GRID:grid.431072.3) (ISNI:0000 0004 0572 4227) 
23  AbbVie Bioresearch Center Inc, Global Biologics, Worcester, USA (GRID:grid.431072.3) (ISNI:0000 0004 0572 4227) 
24  AbbVie Bioresearch Center Inc, Exploratory Statistics, Worcester, USA (GRID:grid.431072.3) (ISNI:0000 0004 0572 4227) 
25  Amgen, Inc, Department of Neuroscience, Thousand Oaks, USA (GRID:grid.417886.4) (ISNI:0000 0001 0657 5612) 
26  MedImmune Ltd, Respiratory, Inflammation & Autoimmunity, Cambridge, UK (GRID:grid.417815.e) (ISNI:0000 0004 5929 4381) 
27  Astrazeneca, Global Medicines Development, Cambridge, UK (GRID:grid.417815.e) (ISNI:0000 0004 5929 4381) 
28  UCB Celltech, Slough, UK (GRID:grid.418727.f) (ISNI:0000 0004 5903 3819) 
29  Janssen Research & Development Ltd, High Wycombe, UK (GRID:grid.507827.f) 
30  LLC, Spring House, Janssen Research & Development, Pennsylvania, USA (GRID:grid.497530.c) (ISNI:0000 0004 0389 4927) 
31  Janssen Pharmaceutica NV, Beerse, Belgium (GRID:grid.419619.2) (ISNI:0000 0004 0623 0341) 
32  Roche Products Ltd. 6 Falcon Way, Shire Park, Welwyn Garden City, UK (GRID:grid.419227.b) 
33  GlaxoSmithKline R&D Stevenage, Stevenage, UK (GRID:grid.419227.b) 
34  Eisai Ltd, European Knowledge Centre, Hatfield, UK (GRID:grid.428696.7) 
35  Worldwide Research & Development Pfizer Inc, Inflammation and Immunology Research Unit, Washington, USA (GRID:grid.410513.2) (ISNI:0000 0000 8800 7493) 
36  Pfizer Ltd, Tadworth, International Developed Markets, Surrey, UK (GRID:grid.418566.8) (ISNI:0000 0000 9348 0090) 
37  Protagen AG, Dortmund, Germany (GRID:grid.437356.0) 
38  University of Oxford, The Kennedy Institute of Rheumatology, Oxford, UK (GRID:grid.4991.5) (ISNI:0000 0004 1936 8948); University of Oxford, SimOmics Ltd, Kennedy Institute of Rheumatology, Oxford, UK (GRID:grid.4991.5) (ISNI:0000 0004 1936 8948) 
39  University of Oxford, SimOmics Ltd, Kennedy Institute of Rheumatology, Oxford, UK (GRID:grid.4991.5) (ISNI:0000 0004 1936 8948) 
40  Grunenthal GmbH, Aachen, Germany (GRID:grid.428898.7) (ISNI:0000 0004 1765 3892) 
Publication year
2022
Publication date
2022
Publisher
Nature Publishing Group
e-ISSN
20524463
Source type
Scholarly Journal
Language of publication
English
ProQuest document ID
2661274397
Copyright
© The Author(s) 2022. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.