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Abstract
Rheumatoid arthritis (RA) is a chronic inflammatory disorder with poorly defined aetiology characterised by synovial inflammation with variable disease severity and drug responsiveness. To investigate the peripheral blood immune cell landscape of early, drug naive RA, we performed comprehensive clinical and molecular profiling of 267 RA patients and 52 healthy vaccine recipients for up to 18 months to establish a high quality sample biobank including plasma, serum, peripheral blood cells, urine, genomic DNA, RNA from whole blood, lymphocyte and monocyte subsets. We have performed extensive multi-omic immune phenotyping, including genomic, metabolomic, proteomic, transcriptomic and autoantibody profiling. We anticipate that these detailed clinical and molecular data will serve as a fundamental resource offering insights into immune-mediated disease pathogenesis, progression and therapeutic response, ultimately contributing to the development and application of targeted therapies for RA.
Measurement(s) | Transcriptomics, small RNA, proteomics, autoantibodies, metabolomics, genotype, blood, urine |
Technology Type(s) | microarray, RNA sequencing, somascan, NMR metabolomics, luminex autoantibody array, exome array |
Sample Characteristic - Organism | Homo sapiens |
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1 Translational & Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, UK (GRID:grid.1006.7) (ISNI:0000 0001 0462 7212); Musculoskeletal Unit, Newcastle upon Tyne Hospitals NHS Foundation Trust, Newcastle upon Tyne, UK (GRID:grid.420004.2) (ISNI:0000 0004 0444 2244)
2 Newcastle University, Bioinformatics Support Unit, Faculty of Medical Sciences, Newcastle Upon Tyne, UK (GRID:grid.1006.7) (ISNI:0000 0001 0462 7212)
3 King’s College London, Academic Department of Rheumatology, Division of Immunology, Infection and Inflammatory Disease, Faculty of Life Sciences, London, UK (GRID:grid.13097.3c) (ISNI:0000 0001 2322 6764)
4 King’s College London, Department of Immunobiology, Division of Immunology, Infection and Inflammatory Disease, Faculty of Life Sciences, London, UK (GRID:grid.13097.3c) (ISNI:0000 0001 2322 6764)
5 University of Glasgow, Institute of Infection, Immunity and Inflammation, College of Medical, Veterinary and Life Sciences, Glasgow, UK (GRID:grid.8756.c) (ISNI:0000 0001 2193 314X)
6 Gartnavel General Hospital, Glasgow, UK (GRID:grid.415302.1) (ISNI:0000 0000 8948 5526)
7 The University of Leeds, Leeds Institute of Rheumatic and Musculoskeletal Medicine (LIRMM), School of Medicine, and the Leeds NIHR Biomedical Research Centre, Leeds, UK (GRID:grid.9909.9) (ISNI:0000 0004 1936 8403)
8 University of Birmingham and University Hospitals Birmingham NHS Trust and Sandwell and West Birmingham Hospitals NHS Trust, Birmingham, UK (GRID:grid.412919.6)
9 University of Birmingham and Sandwell and West Birmingham Hospitals NHS Trust, Birmingham, UK (GRID:grid.412919.6)
10 Queen Mary University of London, Centre for Experimental Medicine and Rheumatology, William Harvey Research Institute, Faculty of Medicine and Dentistry, London, UK (GRID:grid.4868.2) (ISNI:0000 0001 2171 1133)
11 Queen Mary University of London, Centre for Translational Bioinformatics, William Harvey Research Institute, Faculty of Medicine and Dentistry, London, UK (GRID:grid.4868.2) (ISNI:0000 0001 2171 1133)
12 Queen Mary University of London, Centre for Experimental Medicine and Rheumatology, William Harvey Research Institute, Faculty of Medicine and Dentistry, London, UK (GRID:grid.4868.2) (ISNI:0000 0001 2171 1133); Queen Mary University of London, Centre for Translational Bioinformatics, William Harvey Research Institute, Faculty of Medicine and Dentistry, London, UK (GRID:grid.4868.2) (ISNI:0000 0001 2171 1133)
13 Queen Mary University of London, Centre for Experimental Medicine and Rheumatology, William Harvey Research Institute, Faculty of Medicine and Dentistry, London, UK (GRID:grid.4868.2) (ISNI:0000 0001 2171 1133); University College London, Division of Medicine, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201)
14 University College London, Division of Medicine, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201)
15 University of Manchester, Centre for Musculoskeletal Research, NIHR Manchester Biomedical Research Centre, School of Biological Sciences, Faculty of Biology, Medicine and Health, Manchester, UK (GRID:grid.5379.8) (ISNI:0000000121662407)
16 University of Cambridge, MRC Biostatistics Unit, Cambridge, UK (GRID:grid.5335.0) (ISNI:0000000121885934)
17 University of Oxford, The Kennedy Institute of Rheumatology, Oxford, UK (GRID:grid.4991.5) (ISNI:0000 0004 1936 8948)
18 Abbvie Ltd, Medical Affairs, Maidenhead, UK (GRID:grid.476021.6) (ISNI:0000 0004 1797 2869)
19 AbbVie Bioresearch Center Inc, Translational Immunology, Worcester, USA (GRID:grid.431072.3) (ISNI:0000 0004 0572 4227)
20 Abbvie Bioresearch Center Inc, Immunology Clinical Development, Worcester, USA (GRID:grid.431072.3) (ISNI:0000 0004 0572 4227)
21 AbbVie Bioresearch Center Inc, Immunology Pharmacology, Worcester, USA (GRID:grid.431072.3) (ISNI:0000 0004 0572 4227)
22 AbbVie Bioresearch Center Inc, Information Research, Worcester, USA (GRID:grid.431072.3) (ISNI:0000 0004 0572 4227)
23 AbbVie Bioresearch Center Inc, Global Biologics, Worcester, USA (GRID:grid.431072.3) (ISNI:0000 0004 0572 4227)
24 AbbVie Bioresearch Center Inc, Exploratory Statistics, Worcester, USA (GRID:grid.431072.3) (ISNI:0000 0004 0572 4227)
25 Amgen, Inc, Department of Neuroscience, Thousand Oaks, USA (GRID:grid.417886.4) (ISNI:0000 0001 0657 5612)
26 MedImmune Ltd, Respiratory, Inflammation & Autoimmunity, Cambridge, UK (GRID:grid.417815.e) (ISNI:0000 0004 5929 4381)
27 Astrazeneca, Global Medicines Development, Cambridge, UK (GRID:grid.417815.e) (ISNI:0000 0004 5929 4381)
28 UCB Celltech, Slough, UK (GRID:grid.418727.f) (ISNI:0000 0004 5903 3819)
29 Janssen Research & Development Ltd, High Wycombe, UK (GRID:grid.507827.f)
30 LLC, Spring House, Janssen Research & Development, Pennsylvania, USA (GRID:grid.497530.c) (ISNI:0000 0004 0389 4927)
31 Janssen Pharmaceutica NV, Beerse, Belgium (GRID:grid.419619.2) (ISNI:0000 0004 0623 0341)
32 Roche Products Ltd. 6 Falcon Way, Shire Park, Welwyn Garden City, UK (GRID:grid.419227.b)
33 GlaxoSmithKline R&D Stevenage, Stevenage, UK (GRID:grid.419227.b)
34 Eisai Ltd, European Knowledge Centre, Hatfield, UK (GRID:grid.428696.7)
35 Worldwide Research & Development Pfizer Inc, Inflammation and Immunology Research Unit, Washington, USA (GRID:grid.410513.2) (ISNI:0000 0000 8800 7493)
36 Pfizer Ltd, Tadworth, International Developed Markets, Surrey, UK (GRID:grid.418566.8) (ISNI:0000 0000 9348 0090)
37 Protagen AG, Dortmund, Germany (GRID:grid.437356.0)
38 University of Oxford, The Kennedy Institute of Rheumatology, Oxford, UK (GRID:grid.4991.5) (ISNI:0000 0004 1936 8948); University of Oxford, SimOmics Ltd, Kennedy Institute of Rheumatology, Oxford, UK (GRID:grid.4991.5) (ISNI:0000 0004 1936 8948)
39 University of Oxford, SimOmics Ltd, Kennedy Institute of Rheumatology, Oxford, UK (GRID:grid.4991.5) (ISNI:0000 0004 1936 8948)
40 Grunenthal GmbH, Aachen, Germany (GRID:grid.428898.7) (ISNI:0000 0004 1765 3892)