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© The Author(s) 2022. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.

Abstract

Background

Diarrhoea is still a major public health issue in developing countries, and it is one of the leading causes of morbidity and mortality in children. We aimed to assess the use of a multiplex reverse transcription polymerase chain reaction (RT-PCR) assay for the detection of five viruses, including rotavirus, norovirus (genogroups 1 and 2), astrovirus, and adenovirus, responsible for gastroenteritis in children under 5 years old in primary care centres in Upper Egypt.

Subjects and methods

A total of 500 stool samples were collected. Fifty samples were randomly selected for viral examination using multiplex RT-PCR for the detection of rotavirus, norovirus (genogroups 1 and 2), astrovirus, and adenovirus, causing diarrhoea.

Results

Viruses were detected in 45 (90%) of the 50 stool samples. The most frequently identified virus was norovirus G2, followed by Group A rotavirus, astrovirus and adenovirus. Mixed infection by two and three viruses was observed in 7/50 cases (14%) and 2/50 cases (4%), respectively. Norovirus G1 was not detected in the samples examined.

Conclusion

Our study reveals that multiplex PCR allows for the detection of multiple viral targets in only one reaction, rendering the assay easier to perform compared to existing testing methodologies (RT-PCR and electron microscopy). Additionally, most of the viruses were detected in summer, and the highest prevalence was in the age group less than 1 year. Norovirus G2 and rotavirus were the most frequent agents and the most common coinfections responsible for gastroenteritis in children.

Details

Title
Use of multiplex PCR in diagnosis of childhood acute viral diarrhoea caused by rotavirus, norovirus, astrovirus and adenovirus in Upper Egypt
Author
Othma, Amr Abulhamd Sayed 1 ; Gomaa, Howayda Ezz Eldin 1 ; El Anany, Mervat Gaber 2 ; Abdul Rahman, Eiman Mohammed 2 ; Hassan, Eman Mahmoud 1 ; Abd Elbaky, Abeer M. Nour Eldin 3 ; Soliman, May Mohamed Sherif 2 ; Awadallah, Eman 1 

 National Research Centre, Department of Clinical and Chemical Pathology, Cairo, Egypt (GRID:grid.419725.c) (ISNI:0000 0001 2151 8157) 
 Cairo University, Department of Clinical and Chemical Pathology, Cairo, Egypt (GRID:grid.7776.1) (ISNI:0000 0004 0639 9286) 
 National Research Centre, Department of Pediatrics, Cairo, Egypt (GRID:grid.419725.c) (ISNI:0000 0001 2151 8157) 
Pages
40
Publication year
2022
Publication date
Dec 2022
Publisher
Springer Nature B.V.
ISSN
11108630
e-ISSN
20902441
Source type
Scholarly Journal
Language of publication
English
ProQuest document ID
2670532459
Copyright
© The Author(s) 2022. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.