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Abstract
Podosomes are actin-enriched adhesion structures important for multiple cellular processes, including migration, bone remodeling, and phagocytosis. Here, we characterize the structure and organization of phagocytic podosomes using interferometric photoactivated localization microscopy, a super-resolution microscopy technique capable of 15–20 nm resolution, together with structured illumination microscopy and localization-based super-resolution microscopy. Phagocytic podosomes are observed during frustrated phagocytosis, a model in which cells attempt to engulf micropatterned IgG antibodies. For circular patterns, this results in regular arrays of podosomes with well-defined geometry. Using persistent homology, we develop a pipeline for semi-automatic identification and measurement of podosome features. These studies reveal an hourglass shape of the podosome actin core, a protruding knob at the bottom of the core, and two actin networks extending from the core. Additionally, the distributions of paxillin, talin, myosin II, α-actinin, cortactin, and microtubules relative to actin are characterized.
Podosomes are actin structures important in multiple cell functions. Here, the authors use iPALM microscopy to reveal an “hourglass” shape of the podosome actin core, a protruding “knob” at the bottom of the core, and two actin networks extending from it.
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1 University of North Carolina at Chapel Hill, Curriculum in Bioinformatics and Computational Biology, Chapel Hill, USA (GRID:grid.10698.36) (ISNI:0000000122483208); University of North Carolina at Chapel Hill, Computational Medicine Program, Chapel Hill, USA (GRID:grid.10698.36) (ISNI:0000000122483208)
2 University of North Carolina at Chapel Hill, Department of Pharmacology, School of Medicine, Chapel Hill, USA (GRID:grid.10698.36) (ISNI:0000000122483208)
3 University of North Carolina at Chapel Hill, Department of Pharmacology, School of Medicine, Chapel Hill, USA (GRID:grid.10698.36) (ISNI:0000000122483208); Fujita Health University, Division of Gene Regulation, Cancer Center, Toyoake, Japan (GRID:grid.256115.4) (ISNI:0000 0004 1761 798X)
4 University of North Carolina at Chapel Hill, Department of Physics and Astronomy, Chapel Hill, USA (GRID:grid.10698.36) (ISNI:0000000122483208)
5 Howard Hughes Medical Institute Janelia Research Campus, Advanced Imaging Center, Ashburn, USA (GRID:grid.443970.d)
6 University of North Carolina at Chapel Hill, Department of Chemistry, Chapel Hill, USA (GRID:grid.10698.36) (ISNI:0000000122483208); University of North Carolina at Chapel Hill, Program in Molecular and Cellular Biophysics, Chapel Hill, USA (GRID:grid.10698.36) (ISNI:0000000122483208)
7 University of North Carolina at Chapel Hill, Curriculum in Bioinformatics and Computational Biology, Chapel Hill, USA (GRID:grid.10698.36) (ISNI:0000000122483208); University of North Carolina at Chapel Hill, Computational Medicine Program, Chapel Hill, USA (GRID:grid.10698.36) (ISNI:0000000122483208); University of North Carolina at Chapel Hill, Department of Pharmacology, School of Medicine, Chapel Hill, USA (GRID:grid.10698.36) (ISNI:0000000122483208)
8 University of North Carolina at Chapel Hill, Computational Medicine Program, Chapel Hill, USA (GRID:grid.10698.36) (ISNI:0000000122483208); University of North Carolina at Chapel Hill, Department of Pharmacology, School of Medicine, Chapel Hill, USA (GRID:grid.10698.36) (ISNI:0000000122483208)