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Abstract
Few studies from Africa have described the clinical impact of co-infections on SARS-CoV-2 infection. Here, we investigate the presentation and outcome of SARS-CoV-2 infection in an African setting of high HIV-1 and tuberculosis prevalence by an observational case cohort of SARS-CoV-2 patients. A comparator group of non SARS-CoV-2 participants is included. The study includes 104 adults with SARS-CoV-2 infection of whom 29.8% are HIV-1 co-infected. Two or more co-morbidities are present in 57.7% of participants, including HIV-1 (30%) and active tuberculosis (14%). Amongst patients dually infected by tuberculosis and SARS-CoV-2, clinical features can be typical of either SARS-CoV-2 or tuberculosis: lymphopenia is exacerbated, and some markers of inflammation (D-dimer and ferritin) are further elevated (p < 0.05). Amongst HIV-1 co-infected participants those with low CD4 percentage strata exhibit reduced total, but not neutralising, anti-SARS-CoV-2 antibodies. SARS-CoV-2 specific CD8 T cell responses are present in 35.8% participants overall but undetectable in combined HIV-1 and tuberculosis. Death occurred in 30/104 (29%) of all COVID-19 patients and in 6/15 (40%) of patients with coincident SARS-CoV-2 and tuberculosis. This shows that in a high incidence setting, tuberculosis is a common co-morbidity in patients admitted to hospital with COVID-19. The immune response to SARS-CoV-2 is adversely affected by co-existent HIV-1 and tuberculosis.
Here the authors describe outcomes of SARS-CoV-2 infection in an African setting of high HIV-1 and tuberculosis prevalence. They find that tuberculosis is a common co-morbidity in patients admitted to hospital with COVID-19 and that the immune response to SARS-CoV-2 is adversely affected by co-existent HIV-1 and tuberculosis.
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1 University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); University of Cape Town, Department of Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151)
2 University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); University of Cape Town, Department of Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); Imperial College London, Department of Infectious Diseases, London, UK (GRID:grid.7445.2) (ISNI:0000 0001 2113 8111)
3 University of Cape Town, Department of Radiology, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151)
4 University of Cape Town, Department of Pathology, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); National Health Laboratory Service, Groote Schuur Complex, Department of Clinical Virology, Observatory, Republic of South Africa (GRID:grid.416657.7) (ISNI:0000 0004 0630 4574)
5 University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); University of Cape Town, Department of Integrated Biomedical Sciences, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); International Centre for Genetic Engineering and Biotechnology (ICGEB), Cape Town, South Africa (GRID:grid.443877.b)
6 University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151)
7 Stellenbosch University and Tygerberg Hospital, Division of Pulmonology, Department of Medicine, Cape Town, Republic of South Africa (GRID:grid.11956.3a) (ISNI:0000 0001 2214 904X)
8 University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); The Francis Crick Institute, London, UK (GRID:grid.451388.3) (ISNI:0000 0004 1795 1830); University College London, Division of Life Sciences, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201)
9 University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); Imperial College London, Department of Infectious Diseases, London, UK (GRID:grid.7445.2) (ISNI:0000 0001 2113 8111); The Francis Crick Institute, London, UK (GRID:grid.451388.3) (ISNI:0000 0004 1795 1830)
10 University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); University of Cape Town, Department of Pathology, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); The Walter and Eliza Hall Institute of Medical Research, Parkville Victoria, Australia (GRID:grid.1042.7) (ISNI:0000 0004 0432 4889)
11 University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); University of Cape Town, Department of Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); The Francis Crick Institute, London, UK (GRID:grid.451388.3) (ISNI:0000 0004 1795 1830); University College London, Division of Life Sciences, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201)
12 University of Cape Town, Department of Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151)
13 University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); Western Cape Department of Health, Health Impact Assessment unit, Cape Town, Republic of South Africa (GRID:grid.467135.2) (ISNI:0000 0004 0635 5945); University of Cape Town, Centre for Infectious Disease Epidemiology and Research, School of Public Health and Family Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); University of Cape Town, Division of Computational Biology, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151)
14 Livingstone Hospital, Gqeberha, Republic of South Africa (GRID:grid.461120.0) (ISNI:0000 0004 0470 1904)
15 University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); Livingstone Hospital, Gqeberha, Republic of South Africa (GRID:grid.461120.0) (ISNI:0000 0004 0470 1904)
16 University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); University of Cape Town, Department of Pathology, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151)
17 University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); Imperial College London, Department of Infectious Diseases, London, UK (GRID:grid.7445.2) (ISNI:0000 0001 2113 8111)
18 University of Oxford, Sir William Dunn School of Pathology, Oxford, UK (GRID:grid.4991.5) (ISNI:0000 0004 1936 8948)
19 University of Surrey, Department of Biochemical Sciences, Guildford, UK (GRID:grid.5475.3) (ISNI:0000 0004 0407 4824)
20 The Francis Crick Institute, London, UK (GRID:grid.451388.3) (ISNI:0000 0004 1795 1830)
21 University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); University of Cape Town, Department of Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); Imperial College London, Department of Infectious Diseases, London, UK (GRID:grid.7445.2) (ISNI:0000 0001 2113 8111); The Francis Crick Institute, London, UK (GRID:grid.451388.3) (ISNI:0000 0004 1795 1830)