Abstract

Few studies from Africa have described the clinical impact of co-infections on SARS-CoV-2 infection. Here, we investigate the presentation and outcome of SARS-CoV-2 infection in an African setting of high HIV-1 and tuberculosis prevalence by an observational case cohort of SARS-CoV-2 patients. A comparator group of non SARS-CoV-2 participants is included. The study includes 104 adults with SARS-CoV-2 infection of whom 29.8% are HIV-1 co-infected. Two or more co-morbidities are present in 57.7% of participants, including HIV-1 (30%) and active tuberculosis (14%). Amongst patients dually infected by tuberculosis and SARS-CoV-2, clinical features can be typical of either SARS-CoV-2 or tuberculosis: lymphopenia is exacerbated, and some markers of inflammation (D-dimer and ferritin) are further elevated (p < 0.05). Amongst HIV-1 co-infected participants those with low CD4 percentage strata exhibit reduced total, but not neutralising, anti-SARS-CoV-2 antibodies. SARS-CoV-2 specific CD8 T cell responses are present in 35.8% participants overall but undetectable in combined HIV-1 and tuberculosis. Death occurred in 30/104 (29%) of all COVID-19 patients and in 6/15 (40%) of patients with coincident SARS-CoV-2 and tuberculosis. This shows that in a high incidence setting, tuberculosis is a common co-morbidity in patients admitted to hospital with COVID-19. The immune response to SARS-CoV-2 is adversely affected by co-existent HIV-1 and tuberculosis.

Here the authors describe outcomes of SARS-CoV-2 infection in an African setting of high HIV-1 and tuberculosis prevalence. They find that tuberculosis is a common co-morbidity in patients admitted to hospital with COVID-19 and that the immune response to SARS-CoV-2 is adversely affected by co-existent HIV-1 and tuberculosis.

Details

Title
Effects of tuberculosis and/or HIV-1 infection on COVID-19 presentation and immune response in Africa
Author
du Bruyn, Elsa 1 ; Stek, Cari 2 ; Daroowala, Remi 2 ; Said-Hartley, Qonita 3 ; Hsiao, Marvin 4   VIAFID ORCID Logo  ; Schafer, Georgia 5 ; Goliath, Rene T. 6   VIAFID ORCID Logo  ; Abrahams, Fatima 6 ; Jackson, Amanda 6 ; Wasserman, Sean 1 ; Allwood, Brian W. 7 ; Davis, Angharad G. 8 ; Lai, Rachel P.-J. 9 ; Coussens, Anna K. 10   VIAFID ORCID Logo  ; Wilkinson, Katalin A. 11   VIAFID ORCID Logo  ; de Vries, Jantina 12   VIAFID ORCID Logo  ; Tiffin, Nicki 13   VIAFID ORCID Logo  ; Cerrone, Maddalena 9   VIAFID ORCID Logo  ; Ntusi, Ntobeko A. B. 1   VIAFID ORCID Logo  ; Abrahams, Fatimah 6 ; Allwood, Brian 7 ; Aziz, Saalikha 6 ; Bangani, Nonzwakazi 6 ; Black, John 14 ; Blumenthal, Melissa 12 ; Bremer, Marise 15 ; Burgers, Wendy 16 ; Ciko, Zandile 6 ; Daroowala, Remy 17 ; Esmail, Hanif G. 6 ; Gordon, Siamon 18 ; Harley, Yolande X. R. 6 ; Lakay, Francisco 6 ; Martinez-Estrada, Fernando-Oneissi 19 ; Meintjes, Graeme 12 ; Mendelson, Marc S. 1 ; Ntusi, Ntobeko 1 ; Papavarnavas, Tari 12 ; Proust, Alize 20 ; Ruzive, Sheena 6 ; Serole, Keboile 6 ; Whitaker, Claire 6 ; Wilkinson, Robert J. 21 ; Zvinairo, Kennedy 6 ; Riou, Catherine 16   VIAFID ORCID Logo 

 University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); University of Cape Town, Department of Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151) 
 University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); University of Cape Town, Department of Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); Imperial College London, Department of Infectious Diseases, London, UK (GRID:grid.7445.2) (ISNI:0000 0001 2113 8111) 
 University of Cape Town, Department of Radiology, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151) 
 University of Cape Town, Department of Pathology, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); National Health Laboratory Service, Groote Schuur Complex, Department of Clinical Virology, Observatory, Republic of South Africa (GRID:grid.416657.7) (ISNI:0000 0004 0630 4574) 
 University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); University of Cape Town, Department of Integrated Biomedical Sciences, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); International Centre for Genetic Engineering and Biotechnology (ICGEB), Cape Town, South Africa (GRID:grid.443877.b) 
 University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151) 
 Stellenbosch University and Tygerberg Hospital, Division of Pulmonology, Department of Medicine, Cape Town, Republic of South Africa (GRID:grid.11956.3a) (ISNI:0000 0001 2214 904X) 
 University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); The Francis Crick Institute, London, UK (GRID:grid.451388.3) (ISNI:0000 0004 1795 1830); University College London, Division of Life Sciences, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201) 
 University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); Imperial College London, Department of Infectious Diseases, London, UK (GRID:grid.7445.2) (ISNI:0000 0001 2113 8111); The Francis Crick Institute, London, UK (GRID:grid.451388.3) (ISNI:0000 0004 1795 1830) 
10  University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); University of Cape Town, Department of Pathology, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); The Walter and Eliza Hall Institute of Medical Research, Parkville Victoria, Australia (GRID:grid.1042.7) (ISNI:0000 0004 0432 4889) 
11  University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); University of Cape Town, Department of Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); The Francis Crick Institute, London, UK (GRID:grid.451388.3) (ISNI:0000 0004 1795 1830); University College London, Division of Life Sciences, London, UK (GRID:grid.83440.3b) (ISNI:0000000121901201) 
12  University of Cape Town, Department of Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151) 
13  University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); Western Cape Department of Health, Health Impact Assessment unit, Cape Town, Republic of South Africa (GRID:grid.467135.2) (ISNI:0000 0004 0635 5945); University of Cape Town, Centre for Infectious Disease Epidemiology and Research, School of Public Health and Family Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); University of Cape Town, Division of Computational Biology, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151) 
14  Livingstone Hospital, Gqeberha, Republic of South Africa (GRID:grid.461120.0) (ISNI:0000 0004 0470 1904) 
15  University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); Livingstone Hospital, Gqeberha, Republic of South Africa (GRID:grid.461120.0) (ISNI:0000 0004 0470 1904) 
16  University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); University of Cape Town, Department of Pathology, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151) 
17  University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); Imperial College London, Department of Infectious Diseases, London, UK (GRID:grid.7445.2) (ISNI:0000 0001 2113 8111) 
18  University of Oxford, Sir William Dunn School of Pathology, Oxford, UK (GRID:grid.4991.5) (ISNI:0000 0004 1936 8948) 
19  University of Surrey, Department of Biochemical Sciences, Guildford, UK (GRID:grid.5475.3) (ISNI:0000 0004 0407 4824) 
20  The Francis Crick Institute, London, UK (GRID:grid.451388.3) (ISNI:0000 0004 1795 1830) 
21  University of Cape Town, Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Diseases and Molecular Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); University of Cape Town, Department of Medicine, Observatory, Republic of South Africa (GRID:grid.7836.a) (ISNI:0000 0004 1937 1151); Imperial College London, Department of Infectious Diseases, London, UK (GRID:grid.7445.2) (ISNI:0000 0001 2113 8111); The Francis Crick Institute, London, UK (GRID:grid.451388.3) (ISNI:0000 0004 1795 1830) 
Pages
188
Publication year
2023
Publication date
2023
Publisher
Nature Publishing Group
e-ISSN
20411723
Source type
Scholarly Journal
Language of publication
English
ProQuest document ID
2764899328
Copyright
© The Author(s) 2023. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.