Abstract

Several drug screening campaigns identified Calpeptin as a drug candidate against SARS-CoV-2. Initially reported to target the viral main protease (Mpro), its moderate activity in Mpro inhibition assays hints at a second target. Indeed, we show that Calpeptin is an extremely potent cysteine cathepsin inhibitor, a finding additionally supported by X-ray crystallography. Cell infection assays proved Calpeptin’s efficacy against SARS-CoV-2. Treatment of SARS-CoV-2-infected Golden Syrian hamsters with sulfonated Calpeptin at a dose of 1 mg/kg body weight reduces the viral load in the trachea. Despite a higher risk of side effects, an intrinsic advantage in targeting host proteins is their mutational stability in contrast to highly mutable viral targets. Here we show that the inhibition of cathepsins, a protein family of the host organism, by calpeptin is a promising approach for the treatment of SARS-CoV-2 and potentially other viral infections.

Reinke et. al. show that targeting host proteins like cathepsins is a promising strategy for treating SARS-CoV-2 and other viral infections due to their mutational stability in contrast to highly mutable viral targets.

Details

Title
Calpeptin is a potent cathepsin inhibitor and drug candidate for SARS-CoV-2 infections
Author
Reinke, Patrick Y. A. 1   VIAFID ORCID Logo  ; de Souza, Edmarcia Elisa 2 ; Günther, Sebastian 1   VIAFID ORCID Logo  ; Falke, Sven 1   VIAFID ORCID Logo  ; Lieske, Julia 1   VIAFID ORCID Logo  ; Ewert, Wiebke 1   VIAFID ORCID Logo  ; Loboda, Jure 3   VIAFID ORCID Logo  ; Herrmann, Alexander 4   VIAFID ORCID Logo  ; Rahmani Mashhour, Aida 1   VIAFID ORCID Logo  ; Karničar, Katarina 5   VIAFID ORCID Logo  ; Usenik, Aleksandra 5   VIAFID ORCID Logo  ; Lindič, Nataša 6   VIAFID ORCID Logo  ; Sekirnik, Andreja 6 ; Botosso, Viviane Fongaro 7   VIAFID ORCID Logo  ; Santelli, Gláucia Maria Machado 8 ; Kapronezai, Josana 7   VIAFID ORCID Logo  ; de Araújo, Marcelo Valdemir 9   VIAFID ORCID Logo  ; Silva-Pereira, Taiana Tainá 10 ; Filho, Antônio Francisco de Souza 11   VIAFID ORCID Logo  ; Tavares, Mariana Silva 11 ; Flórez-Álvarez, Lizdany 2 ; de Oliveira, Danielle Bruna Leal 11   VIAFID ORCID Logo  ; Durigon, Edison Luiz 11 ; Giaretta, Paula Roberta 12   VIAFID ORCID Logo  ; Heinemann, Marcos Bryan 13   VIAFID ORCID Logo  ; Hauser, Maurice 14 ; Seychell, Brandon 15 ; Böhler, Hendrik 15 ; Rut, Wioletta 16 ; Drag, Marcin 16   VIAFID ORCID Logo  ; Beck, Tobias 17   VIAFID ORCID Logo  ; Cox, Russell 14   VIAFID ORCID Logo  ; Chapman, Henry N. 18   VIAFID ORCID Logo  ; Betzel, Christian 19   VIAFID ORCID Logo  ; Brehm, Wolfgang 1 ; Hinrichs, Winfried 20   VIAFID ORCID Logo  ; Ebert, Gregor 21   VIAFID ORCID Logo  ; Latham, Sharissa L. 22 ; Guimarães, Ana Marcia de Sá 11   VIAFID ORCID Logo  ; Turk, Dusan 5   VIAFID ORCID Logo  ; Wrenger, Carsten 2   VIAFID ORCID Logo  ; Meents, Alke 1   VIAFID ORCID Logo 

 Deutsches Elektronen-Synchrotron DESY, Center for Free-Electron Laser Science CFEL, Hamburg, Germany (GRID:grid.7683.a) (ISNI:0000 0004 0492 0453) 
 Institute of Biomedical Sciences at the University of São Paulo, Department of Parasitology, São Paulo, Brazil (GRID:grid.11899.38) (ISNI:0000 0004 1937 0722) 
 Jozef Stefan Institute, Department of Biochemistry and Molecular and Structural Biology, Ljubljana, Slovenia (GRID:grid.445211.7); Jožef Stefan International Postgraduate School, Ljubljana, Slovenia (GRID:grid.445211.7) 
 Helmholtz Munich, Institute of Virology, Munich, Germany (GRID:grid.445211.7) 
 Jozef Stefan Institute, Department of Biochemistry and Molecular and Structural Biology, Ljubljana, Slovenia (GRID:grid.445211.7); Centre of Excellence for Integrated Approaches in Chemistry and Biology of Proteins, Ljubljana, Slovenia (GRID:grid.457168.9) 
 Jozef Stefan Institute, Department of Biochemistry and Molecular and Structural Biology, Ljubljana, Slovenia (GRID:grid.445211.7) 
 Butantan Institute, Virology Laboratory, Center of Development and Innovation, São Paulo, Brazil (GRID:grid.418514.d) (ISNI:0000 0001 1702 8585) 
 University of São Paulo, Department of Cell and Developmental Biology, Institute of Biomedical Sciences, São Paulo, Brazil (GRID:grid.11899.38) (ISNI:0000 0004 1937 0722) 
 Butantan Institute, Virology Laboratory, Center of Development and Innovation, São Paulo, Brazil (GRID:grid.418514.d) (ISNI:0000 0001 1702 8585); University of São Paulo, Department of Microbiology, Institute of Biomedical Sciences, São Paulo, Brazil (GRID:grid.11899.38) (ISNI:0000 0004 1937 0722) 
10  University of São Paulo, Department of Microbiology, Institute of Biomedical Sciences, São Paulo, Brazil (GRID:grid.11899.38) (ISNI:0000 0004 1937 0722); University of São Paulo, Department of Preventive Veterinary Medicine and Animal Health, College of Veterinary Medicine, São Paulo, Brazil (GRID:grid.11899.38) (ISNI:0000 0004 1937 0722) 
11  University of São Paulo, Department of Microbiology, Institute of Biomedical Sciences, São Paulo, Brazil (GRID:grid.11899.38) (ISNI:0000 0004 1937 0722) 
12  Texas A&M University, Gastrointestinal Laboratory, Department of Small Animal Clinical Sciences, College of Veterinary Medicine and Biomedical Sciences, School Station, USA (GRID:grid.264756.4) (ISNI:0000 0004 4687 2082) 
13  University of São Paulo, Department of Preventive Veterinary Medicine and Animal Health, College of Veterinary Medicine, São Paulo, Brazil (GRID:grid.11899.38) (ISNI:0000 0004 1937 0722) 
14  Leibniz University of Hannover, Institute for Organic Chemistry and BMWZ, Hannover, Germany (GRID:grid.9122.8) (ISNI:0000 0001 2163 2777) 
15  Universität Hamburg, Department of Chemistry, Institute of Physical Chemistry, Hamburg, Germany (GRID:grid.9026.d) (ISNI:0000 0001 2287 2617) 
16  Wrocław University of Science and Technology, Department of Chemical Biology and Bioimaging, Faculty of Chemistry, Wrocław, Poland (GRID:grid.7005.2) (ISNI:0000 0000 9805 3178) 
17  Universität Hamburg, Department of Chemistry, Institute of Physical Chemistry, Hamburg, Germany (GRID:grid.9026.d) (ISNI:0000 0001 2287 2617); Universität Hamburg, Hamburg Centre for Ultrafast Imaging, Hamburg, Germany (GRID:grid.9026.d) (ISNI:0000 0001 2287 2617) 
18  Deutsches Elektronen-Synchrotron DESY, Center for Free-Electron Laser Science CFEL, Hamburg, Germany (GRID:grid.7683.a) (ISNI:0000 0004 0492 0453); Universität Hamburg, Hamburg Centre for Ultrafast Imaging, Hamburg, Germany (GRID:grid.9026.d) (ISNI:0000 0001 2287 2617); Universität Hamburg, Department of Physics, Hamburg, Germany (GRID:grid.9026.d) (ISNI:0000 0001 2287 2617) 
19  Universität Hamburg, Hamburg Centre for Ultrafast Imaging, Hamburg, Germany (GRID:grid.9026.d) (ISNI:0000 0001 2287 2617); Universität Hamburg, Department of Chemistry, Institute of Biochemistry and Molecular Biology and Laboratory for Structural Biology of Infection and Inflammation, c/o DESY, Hamburg, Germany (GRID:grid.9026.d) (ISNI:0000 0001 2287 2617) 
20  Universität Greifswald, Institute of Biochemistry, Greifswald, Germany (GRID:grid.5603.0) 
21  Helmholtz Munich, Institute of Virology, Munich, Germany (GRID:grid.5603.0); Technical University of Munich, Institute of Virology, Munich, Germany (GRID:grid.6936.a) (ISNI:0000 0001 2322 2966) 
22  Garvan Institute of Medical Research, The Kinghorn Cancer Centre, Sydney, Australia (GRID:grid.415306.5) (ISNI:0000 0000 9983 6924); UNSW, St Vincent’s Hospital Clinical School, Sydney, Australia (GRID:grid.1005.4) (ISNI:0000 0004 4902 0432) 
Pages
1058
Publication year
2023
Publication date
2023
Publisher
Nature Publishing Group
e-ISSN
23993642
Source type
Scholarly Journal
Language of publication
English
ProQuest document ID
2878564309
Copyright
© The Author(s) 2023. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.