Abstract

Free-electron lasers (FEL) are revolutionizing X-ray-based structural biology methods. While protein crystallography is already routinely performed at FELs, Small Angle X-ray Scattering (SAXS) studies of biological macromolecules are not as prevalent. SAXS allows the study of the shape and overall structure of proteins and nucleic acids in solution, in a quasi-native environment. In solution, chemical and biophysical parameters that have an influence on the structure and dynamics of molecules can be varied and their effect on conformational changes can be monitored in time-resolved XFEL and SAXS experiments. We report here the collection of scattering form factors of proteins in solution using FEL X-rays. The form factors correspond to the scattering signal of the protein ensemble alone; the scattering contributions from the solvent and the instrument are separately measured and accurately subtracted. The experiment was done using a liquid jet for sample delivery. These results pave the way for time-resolved studies and measurements from dilute samples, capitalizing on the intense and short FEL X-ray pulses.

The use of free-electron laser (FEL) X-rays to collect SAXS form factors of proteins in solution is demonstrated.

Details

Title
Form factor determination of biological molecules with X-ray free electron laser small-angle scattering (XFEL-SAS)
Author
Blanchet, Clement E. 1   VIAFID ORCID Logo  ; Round, Adam 2   VIAFID ORCID Logo  ; Mertens, Haydyn D. T. 1   VIAFID ORCID Logo  ; Ayyer, Kartik 3   VIAFID ORCID Logo  ; Graewert, Melissa 1   VIAFID ORCID Logo  ; Awel, Salah 4 ; Franke, Daniel 5 ; Dörner, Katerina 2 ; Bajt, Saša 6   VIAFID ORCID Logo  ; Bean, Richard 2 ; Custódio, Tânia F. 7 ; de Wijn, Raphael 2   VIAFID ORCID Logo  ; Juncheng, E. 2   VIAFID ORCID Logo  ; Henkel, Alessandra 4 ; Gruzinov, Andrey 1 ; Jeffries, Cy M. 1   VIAFID ORCID Logo  ; Kim, Yoonhee 2 ; Kirkwood, Henry 2   VIAFID ORCID Logo  ; Kloos, Marco 2   VIAFID ORCID Logo  ; Knoška, Juraj 4 ; Koliyadu, Jayanath 2   VIAFID ORCID Logo  ; Letrun, Romain 2   VIAFID ORCID Logo  ; Löw, Christian 7   VIAFID ORCID Logo  ; Makroczyova, Jana 2 ; Mall, Abhishek 8 ; Meijers, Rob 9 ; Pena Murillo, Gisel Esperanza 4   VIAFID ORCID Logo  ; Oberthür, Dominik 4   VIAFID ORCID Logo  ; Round, Ekaterina 2 ; Seuring, Carolin 10   VIAFID ORCID Logo  ; Sikorski, Marcin 2 ; Vagovic, Patrik 11 ; Valerio, Joana 2 ; Wollweber, Tamme 3 ; Zhuang, Yulong 3 ; Schulz, Joachim 2   VIAFID ORCID Logo  ; Haas, Heinrich 12   VIAFID ORCID Logo  ; Chapman, Henry N. 13   VIAFID ORCID Logo  ; Mancuso, Adrian P. 14 ; Svergun, Dmitri 5   VIAFID ORCID Logo 

 European Molecular Biology Laboratory EMBL, Hamburg Site, Hamburg, Germany (GRID:grid.4709.a) (ISNI:0000 0004 0495 846X) 
 European XFEL GmbH, Schenefeld, Germany (GRID:grid.434729.f) (ISNI:0000 0004 0590 2900) 
 The Hamburg Centre for Ultrafast Imaging, Universität Hamburg, Hamburg, Germany (GRID:grid.9026.d) (ISNI:0000 0001 2287 2617); Max Planck Institute for the Structure and Dynamics of Matter, Hamburg, Germany (GRID:grid.469852.4) (ISNI:0000 0004 1796 3508) 
 Center for Free-Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany (GRID:grid.7683.a) (ISNI:0000 0004 0492 0453) 
 European Molecular Biology Laboratory EMBL, Hamburg Site, Hamburg, Germany (GRID:grid.4709.a) (ISNI:0000 0004 0495 846X); BIOSAXS GmbH, Hamburg, Germany (GRID:grid.4709.a) 
 The Hamburg Centre for Ultrafast Imaging, Universität Hamburg, Hamburg, Germany (GRID:grid.9026.d) (ISNI:0000 0001 2287 2617); Center for Free-Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany (GRID:grid.7683.a) (ISNI:0000 0004 0492 0453) 
 European Molecular Biology Laboratory EMBL, Hamburg Site, Hamburg, Germany (GRID:grid.4709.a) (ISNI:0000 0004 0495 846X); Centre for Structural Systems Biology (CSSB), Hamburg, Germany (GRID:grid.511061.2) 
 Max Planck Institute for the Structure and Dynamics of Matter, Hamburg, Germany (GRID:grid.469852.4) (ISNI:0000 0004 1796 3508) 
 Institute for Protein Innovation (IPI), Boston, USA (GRID:grid.511230.4) (ISNI:0000 0004 7645 4762) 
10  Centre for Structural Systems Biology (CSSB), Hamburg, Germany (GRID:grid.511061.2); University of Hamburg, Department of Chemistry, Hamburg, Germany (GRID:grid.9026.d) (ISNI:0000 0001 2287 2617); Leibniz Institute of Virology, Hamburg, Germany (GRID:grid.418481.0) (ISNI:0000 0001 0665 103X) 
11  European XFEL GmbH, Schenefeld, Germany (GRID:grid.434729.f) (ISNI:0000 0004 0590 2900); Center for Free-Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany (GRID:grid.7683.a) (ISNI:0000 0004 0492 0453) 
12  BioNTech SE, Mainz, Germany (GRID:grid.434484.b) (ISNI:0000 0004 4692 2203) 
13  The Hamburg Centre for Ultrafast Imaging, Universität Hamburg, Hamburg, Germany (GRID:grid.9026.d) (ISNI:0000 0001 2287 2617); Center for Free-Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany (GRID:grid.7683.a) (ISNI:0000 0004 0492 0453); Universität Hamburg, Department of Physics, Hamburg, Germany (GRID:grid.9026.d) (ISNI:0000 0001 2287 2617) 
14  European XFEL GmbH, Schenefeld, Germany (GRID:grid.434729.f) (ISNI:0000 0004 0590 2900); La Trobe Institute for Molecular Science, La Trobe University, Department of Chemistry and Physics, Melbourne, Australia (GRID:grid.1018.8) (ISNI:0000 0001 2342 0938) 
Pages
1057
Publication year
2023
Publication date
2023
Publisher
Nature Publishing Group
e-ISSN
23993642
Source type
Scholarly Journal
Language of publication
English
ProQuest document ID
2878564385
Copyright
© The Author(s) 2023. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.