Abstract

The role of the serine/glycine metabolic pathway (SGP) has recently been demonstrated in tumors; however, the pathological relevance of the SGP in thyroid cancer remains unexplored. Here, we perform metabolomic profiling of 17 tumor-normal pairs; bulk transcriptomics of 263 normal thyroid, 348 papillary, and 21 undifferentiated thyroid cancer samples; and single-cell transcriptomes from 15 cases, showing the impact of mitochondrial one-carbon metabolism in thyroid tumors. High expression of serine hydroxymethyltransferase-2 (SHMT2) and methylenetetrahydrofolate dehydrogenase 2 (MTHFD2) is associated with low thyroid differentiation scores and poor clinical features. A subpopulation of tumor cells with high mitochondrial one-carbon pathway activity is observed in the single-cell dataset. SHMT2 inhibition significantly compromises mitochondrial respiration and decreases cell proliferation and tumor size in vitro and in vivo. Collectively, our results highlight the importance of the mitochondrial one-carbon pathway in undifferentiated thyroid cancer and suggest that SHMT2 is a potent therapeutic target.

Different types of metabolic rewiring are reported to drive cancer development and as a potential therapeutic target. Here, the authors perform multi-omics analyses in a cohort of human normal and malignant thyroid samples and show association of mitochondrial one-carbon metabolism with undifferentiated thyroid cancer.

Details

Title
Unraveling the role of the mitochondrial one-carbon pathway in undifferentiated thyroid cancer by multi-omics analyses
Author
Lee, Seong Eun 1   VIAFID ORCID Logo  ; Park, Seongyeol 2   VIAFID ORCID Logo  ; Yi, Shinae 1   VIAFID ORCID Logo  ; Choi, Na Rae 1   VIAFID ORCID Logo  ; Lim, Mi Ae 3 ; Chang, Jae Won 4 ; Won, Ho-Ryun 4 ; Kim, Je Ryong 5 ; Ko, Hye Mi 5 ; Chung, Eun-Jae 6 ; Park, Young Joo 7   VIAFID ORCID Logo  ; Cho, Sun Wook 7 ; Yu, Hyeong Won 8   VIAFID ORCID Logo  ; Choi, June Young 8 ; Yeo, Min-Kyung 9 ; Yi, Boram 10 ; Yi, Kijong 10 ; Lim, Joonoh 10 ; Koh, Jun-Young 10   VIAFID ORCID Logo  ; Lee, Min Jeong 11 ; Heo, Jun Young 11   VIAFID ORCID Logo  ; Yoon, Sang Jun 12 ; Kwon, Sung Won 12   VIAFID ORCID Logo  ; Park, Jong-Lyul 13 ; Chu, In Sun 14   VIAFID ORCID Logo  ; Kim, Jin Man 9 ; Kim, Seon-Young 15   VIAFID ORCID Logo  ; Shan, Yujuan 16 ; Liu, Lihua 16 ; Hong, Sung-A 17 ; Choi, Dong Wook 18 ; Park, Junyoung O. 19   VIAFID ORCID Logo  ; Ju, Young Seok 20   VIAFID ORCID Logo  ; Shong, Minho 21 ; Kim, Seon-Kyu 13   VIAFID ORCID Logo  ; Koo, Bon Seok 3   VIAFID ORCID Logo  ; Kang, Yea Eun 22   VIAFID ORCID Logo 

 Chungnam National University, Research Center for Endocrine and Metabolic Disease, College of Medicine, Daejeon, Republic of Korea (GRID:grid.254230.2) (ISNI:0000 0001 0722 6377); Chungnam National University, Research Institute for Medical Sciences, College of Medicine, Daejeon, Republic of Korea (GRID:grid.254230.2) (ISNI:0000 0001 0722 6377) 
 GENOME INSIGHT TECHNOLOGY Inc, Daejeon, Republic of Korea (GRID:grid.511166.4); Stanford University School of Medicine, Stanford Cancer Institute, Stanford, USA (GRID:grid.168010.e) (ISNI:0000000419368956) 
 Chungnam National University, Research Institute for Medical Sciences, College of Medicine, Daejeon, Republic of Korea (GRID:grid.254230.2) (ISNI:0000 0001 0722 6377); Chungnam National University, Department of Otolaryngology-Head and Neck Surgery, College of Medicine, Daejeon, Republic of Korea (GRID:grid.254230.2) (ISNI:0000 0001 0722 6377) 
 Chungnam National University, Department of Otolaryngology-Head and Neck Surgery, College of Medicine, Daejeon, Republic of Korea (GRID:grid.254230.2) (ISNI:0000 0001 0722 6377) 
 Chungnam National University, Department of Surgery, College of Medicine, Daejeon, Republic of Korea (GRID:grid.254230.2) (ISNI:0000 0001 0722 6377) 
 Seoul National University College of Medicine, Department of Otolaryngology-Head and Neck Surgery, Seoul, Republic of Korea (GRID:grid.31501.36) (ISNI:0000 0004 0470 5905) 
 Seoul National University College of Medicine, Department of Internal Medicine, Seoul, Republic of Korea (GRID:grid.31501.36) (ISNI:0000 0004 0470 5905) 
 Seoul National University Bundang Hospital, Department of Surgery, Seongnam-si, Republic of Korea (GRID:grid.412480.b) (ISNI:0000 0004 0647 3378) 
 Chungnam National University, Department of Pathology, College of Medicine, Daejeon, Republic of Korea (GRID:grid.254230.2) (ISNI:0000 0001 0722 6377) 
10  GENOME INSIGHT TECHNOLOGY Inc, Daejeon, Republic of Korea (GRID:grid.511166.4) 
11  Chungnam National University, Department of Biochemistry, College of Medicine, Daejeon, Republic of Korea (GRID:grid.254230.2) (ISNI:0000 0001 0722 6377) 
12  Seoul National University, College of Pharmacy, Seoul, Republic of Korea (GRID:grid.31501.36) (ISNI:0000 0004 0470 5905) 
13  Korea Research Institute of Bioscience and Biotechnology, Deajeon, Republic of Korea (GRID:grid.249967.7) (ISNI:0000 0004 0636 3099) 
14  Korea Research Institute of Bioscience and Biotechnology, Deajeon, Republic of Korea (GRID:grid.249967.7) (ISNI:0000 0004 0636 3099); University of Science and Technology (UST), Department of Bioscience, Deajeon, Republic of Korea (GRID:grid.412786.e) (ISNI:0000 0004 1791 8264) 
15  Korea Research Institute of Bioscience and Biotechnology, Deajeon, Republic of Korea (GRID:grid.249967.7) (ISNI:0000 0004 0636 3099); University of Science and Technology (UST), Department of Bioscience, Deajeon, Republic of Korea (GRID:grid.412786.e) (ISNI:0000 0004 1791 8264); Korea Research Institute of Bioscience and Biotechnology, Korea Bioinformation Center (KOBIC), Daejeon, Republic of Korea (GRID:grid.249967.7) (ISNI:0000 0004 0636 3099) 
16  Wenzhou Medical University, Department of Nutrition, School of Public Health and Management, Wenzhou, China (GRID:grid.268099.c) (ISNI:0000 0001 0348 3990) 
17  Chungnam National University, Department of Biochemistry, Daejeon, Republic of Korea (GRID:grid.254230.2) (ISNI:0000 0001 0722 6377) 
18  Korea University, Department of Biotechnology, College of Life Sciences and Biotechnology, Seoul, Republic of Korea (GRID:grid.222754.4) (ISNI:0000 0001 0840 2678) 
19  University of California, Los Angeles, Department of Chemical and Biomolecular Engineering, Los Angeles, USA (GRID:grid.19006.3e) (ISNI:0000 0000 9632 6718) 
20  GENOME INSIGHT TECHNOLOGY Inc, Daejeon, Republic of Korea (GRID:grid.511166.4); Korea Advanced Institute of Science and Technology, Graduate School of Medical Science and Engineering, Daejeon, Republic of Korea (GRID:grid.37172.30) (ISNI:0000 0001 2292 0500) 
21  Korea Advanced Institute of Science and Technology, Graduate School of Medical Science and Engineering, Daejeon, Republic of Korea (GRID:grid.37172.30) (ISNI:0000 0001 2292 0500) 
22  Chungnam National University, Research Center for Endocrine and Metabolic Disease, College of Medicine, Daejeon, Republic of Korea (GRID:grid.254230.2) (ISNI:0000 0001 0722 6377); Chungnam National University, Research Institute for Medical Sciences, College of Medicine, Daejeon, Republic of Korea (GRID:grid.254230.2) (ISNI:0000 0001 0722 6377); Chungnam National University, Division of Endocrinology and Metabolism, Department of Internal Medicine, College of Medicine, Daejeon, Republic of Korea (GRID:grid.254230.2) (ISNI:0000 0001 0722 6377) 
Pages
1163
Publication year
2024
Publication date
2024
Publisher
Nature Publishing Group
e-ISSN
20411723
Source type
Scholarly Journal
Language of publication
English
ProQuest document ID
2923573848
Copyright
© The Author(s) 2024. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.