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Abstract
The demographical history of France remains largely understudied despite its central role toward understanding modern population structure across Western Europe. Here, by exploring publicly available Europe-wide genotype datasets together with the genomes of 3234 present-day and six newly sequenced medieval individuals from Northern France, we found extensive fine-scale population structure across Brittany and the downstream Loire basin and increased population differentiation between the northern and southern sides of the river Loire, associated with higher proportions of steppe vs. Neolithic-related ancestry. We also found increased allele sharing between individuals from Western Brittany and those associated with the Bell Beaker complex. Our results emphasise the need for investigating local populations to better understand the distribution of rare (putatively deleterious) variants across space and the importance of common genetic legacy in understanding the sharing of disease-related alleles between Brittany and people from western Britain and Ireland.
Here, the authors look at present day and medieval genome samples from Northern France to piece together demographic history and population structure across Brittany and the Loire basin.
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Details
; Giemza, Joanna 2
; Blum, Michael G. B. 3 ; Bernhardsson, Carolina 4
; Chatel, Stéphanie 2 ; Karakachoff, Matilde 5 ; Saint Pierre, Aude 6 ; Herzig, Anthony F. 6
; Olaso, Robert 7
; Monteil, Martial 8 ; Gallien, Véronique 9 ; Cabot, Elodie 10 ; Svensson, Emma 4 ; Bacq, Delphine 7
; Baron, Estelle 2
; Berthelier, Charlotte 2
; Besse, Céline 7 ; Blanché, Hélène 11
; Bocher, Ozvan 6 ; Boland, Anne 7
; Bonnaud, Stéphanie 2
; Charpentier, Eric 2 ; Dandine-Roulland, Claire 7 ; Férec, Claude 12 ; Fruchet, Christine 2 ; Lecointe, Simon 2 ; Le Floch, Edith 7 ; Ludwig, Thomas E. 12
; Marenne, Gaëlle 6
; Meyer, Vincent 13 ; Quellery, Elisabeth 2 ; Racimo, Fernando 14
; Rouault, Karen 12 ; Sandron, Florian 7 ; Schott, Jean-Jacques 2 ; Velo-Suarez, Lourdes 6 ; Violleau, Jade 2 ; Willerslev, Eske 15
; Coativy, Yves 16
; Jézéquel, Mael 16 ; Le Bris, Daniel 16 ; Nicolas, Clément 17 ; Pailler, Yvan 18 ; Goldberg, Marcel 19
; Zins, Marie 19
; Le Marec, Hervé 2
; Jakobsson, Mattias 4
; Darlu, Pierre 20 ; Génin, Emmanuelle 12
; Deleuze, Jean-François 21
; Redon, Richard 2
; Dina, Christian 2
1 Nantes Université, CHU Nantes, CNRS, INSERM, l’institut du thorax, Nantes, France (GRID:grid.277151.7) (ISNI:0000 0004 0472 0371); Université de Strasbourg, CNRS, GMGM, Strasbourg, France (GRID:grid.11843.3f) (ISNI:0000 0001 2157 9291)
2 Nantes Université, CHU Nantes, CNRS, INSERM, l’institut du thorax, Nantes, France (GRID:grid.277151.7) (ISNI:0000 0004 0472 0371)
3 Univ. Grenoble Alpes, TIMC-IMAG, UMR 5525 CNRS, Grenoble, France (GRID:grid.450307.5)
4 Uppsala University, Department of Organismal Biology, Human Evolution, Uppsala, Sweden (GRID:grid.8993.b) (ISNI:0000 0004 1936 9457)
5 Nantes Université, CHU Nantes, CNRS, INSERM, l’institut du thorax, Nantes, France (GRID:grid.277151.7) (ISNI:0000 0004 0472 0371); Nantes Université, CHU Nantes, Pôle Hospitalo-Universitaire 11: Santé Publique, Clinique des données, INSERMCIC 1413, Nantes, France (GRID:grid.4817.a) (ISNI:0000 0001 2189 0784)
6 Univ Brest, Inserm, EFS, UMR 1078, GGB, Brest, France (GRID:grid.7429.8) (ISNI:0000 0001 2186 6389)
7 Université Paris-Saclay, CEA, Centre National de Recherche en Génomique Humaine (CNRGH), Evry, France (GRID:grid.418135.a) (ISNI:0000 0004 0641 3404); Labex GenMed, Evry, France (GRID:grid.418135.a)
8 Nantes Université, CNRS, Ministère de la Culture, CReAAH, LARA, Nantes, France (GRID:grid.4817.a) (ISNI:0000 0001 2189 0784)
9 INRAP - Institut national de recherches archéologiques préventives, Paris, France (GRID:grid.466734.4) (ISNI:0000 0001 2159 0925); Moyen-Age, CEPAM UMR7264 - Culture et Environnements, Préhistoire, Antiquité, Nice, France (GRID:grid.483157.c) (ISNI:0000 0004 0624 1067)
10 INRAP - Institut national de recherches archéologiques préventives, Paris, France (GRID:grid.466734.4) (ISNI:0000 0001 2159 0925); Faculté de Médecine Site Nord, Anthropologie Bio-Culturelle, Droit, Ethique et Santé, Marseille, France (GRID:grid.5399.6) (ISNI:0000 0001 2176 4817)
11 CEPH, Fondation Jean Dausset, Paris, France (GRID:grid.417836.f) (ISNI:0000 0004 0639 125X)
12 Univ Brest, Inserm, EFS, UMR 1078, GGB, Brest, France (GRID:grid.7429.8) (ISNI:0000 0001 2186 6389); CHRU Brest, Brest, France (GRID:grid.411766.3) (ISNI:0000 0004 0472 3249)
13 Université Paris-Saclay, CEA, Centre National de Recherche en Génomique Humaine (CNRGH), Evry, France (GRID:grid.418135.a) (ISNI:0000 0004 0641 3404)
14 University of Copenhagen, Section for Molecular Ecology and Evolution, Globe Institute, Copenhagen, Denmark (GRID:grid.5254.6) (ISNI:0000 0001 0674 042X)
15 University of Copenhagen, Lundbeck GeoGenetics Centre, GLOBE Institute, Copenhagen, Denmark (GRID:grid.5254.6) (ISNI:0000 0001 0674 042X); University of Cambridge, Department of Zoology, Cambridge, UK (GRID:grid.5335.0) (ISNI:0000 0001 2188 5934)
16 Université de Bretagne Occidentale, Centre de Recherche Bretonne et Celtique, UR 4451, Brest, France (GRID:grid.6289.5) (ISNI:0000 0001 2188 0893)
17 Université Paris 1 Panthéon-Sorbonne, Centre Malher, 9 rue Malher, CNRS UMR 8215 Trajectoires, Paris, France (GRID:grid.10988.38) (ISNI:0000 0001 2173 743X)
18 Université de Brest, Université de Nantes, Université de Rennes 2, Institut Universitaire Européen de la Mer, CPJ ArMeRIE UBO, UMR 6554 LETG, CNRS, Plouzané, France (GRID:grid.466785.e)
19 Université Paris Cité, “Population-based Cohorts Unit”, INSERM, Paris Saclay University, UVSQ, Paris, France (GRID:grid.466785.e)
20 Université de Paris Cité, UMR 7206 Eco-anthropologie, Musée de l’Homme, MNHN, CNRS, Paris, France (GRID:grid.508487.6) (ISNI:0000 0004 7885 7602)
21 Université Paris-Saclay, CEA, Centre National de Recherche en Génomique Humaine (CNRGH), Evry, France (GRID:grid.418135.a) (ISNI:0000 0004 0641 3404); Labex GenMed, Evry, France (GRID:grid.418135.a); CEPH, Fondation Jean Dausset, Paris, France (GRID:grid.417836.f) (ISNI:0000 0004 0639 125X)




