1. Introduction
Leishmaniasis is a group of diseases classified by the World Health Organization (WHO) as Neglected Tropical Diseases. These diseases are transmitted by vectors and caused by protozoa of the genus Leishmania [1]. The WHO reported that in 2020, leishmaniasis was present in 98 countries or territories, and it posed a severe public health issue in four eco-epidemiological regions across the globe: the Americas, East Africa, North Africa, and West and Southeast Asia. That year, there were reports of 208,357 cases of Cutaneous Leishmaniasis (CL) and 12,838 cases of Visceral Leishmaniasis (VL). It is important to note that CL is the most common form, typically characterized by the development of skin ulcers. At the same time, VL is the most severe form and can be fatal if not treated [2]. Leishmaniasis ranked as the third most common parasitic disease in 2015, after schistosomiasis and malaria, based on measures of morbidity and disability-adjusted life years (DALYs) [3]. Clinical manifestations of leishmaniasis vary depending on the parasite’s tropism and the host’s immune status. Notably, of the 31 species that infect mammalian cells, 20 are described as pathogenic for humans [4].
The available treatment for leishmaniasis includes the following drugs: sodium stibogluconate (Pentostam®) and meglumine antimoniate (Glucantime®), which are derivatives of pentavalent antimony, amphotericin B and its lipid formulations, pentamidine, miltefosine, and paromomycin. Antimonial therapy lasts up to 28 days of parenteral administration, and its efficacy varies against different forms of leishmaniasis. The use of pentamidine is limited due to toxicity issues [5]. Amphotericin B has a broad spectrum of effectiveness but is associated with toxicity and requires slow parenteral infusion over four hours. Liposomal formulations of amphotericin B, such as AmBisome®, have reduced toxicity, have a longer plasma half-life, and have been approved for clinical use but are expensive [6,7]. A significant advancement in leishmaniasis therapy has been the introduction of miltefosine, a drug initially developed as an anticancer agent. Existing drugs generally have disadvantages in terms of therapeutic approaches, such as the route of administration, the need for trained professionals for administration in most cases, toxicity, and high cost, and considering the number of pathogenic species concerning therapeutic options, this arsenal still needs to be improved [5,8].
The lack of a vaccine or effective chemotherapy has stimulated many studies involving the research and development of new drugs with potential leishmanicidal activity [9]. Thiourea derivatives are widely described in the literature and have proved helpful in drug research. Several studies have demonstrated the importance of these class of molecules in medicinal chemistry since they exhibited a wide range of biological activities such as anticancer [10], antimicrobial [11], antimycobacterial [12], antiviral [13], and anti-inflammatory ones [14]. In addition to these biological activities, thiourea derivatives also demonstrated antiprotozoal activities. Some studies have already shown their activities against Plasmodium falciparum [15], Trypanosoma cruzi [16], Leishmania major [17], and L. infantum [16]. In a previous work carried out by our research group, different N,N′-disubstituted thioureas were evaluated against promastigote and amastigote forms of L. amazonensis, with low cytotoxicity in murine macrophages, indicating that these derivatives are promising for the treatment of leishmaniasis [18]. Some examples of these thiourea derivatives are given in Figure 1. The incorporation of the piperazine group has been an attractive alternative since this heterocyclic ring is present in molecules with proven in vitro leishmanicidal activity for L. infantum [19,20], L. major, and L. mexicana [21,22] and in vivo for L. donovani [23]. The main objective of this work was to discover new compounds that demonstrate efficacy against L. amazonensis, ensuring safety and selectivity. For this, two generations of substituted thiourea derivatives were planned and synthesized, totaling fifty compounds. We evaluated its activity profile on L. amazonensis by carrying out a study on the structure–activity relationship, in which we verified that the optimization of the first generation (G1) of thioureas with the piperazine moiety forming a piperazine thioureas (second generation, G2).
2. Results
2.1. Chemistry
The first-generation series of thiourea compounds (3a–3b′) were obtained as summarized in Scheme 1. These thiourea derivatives were synthesized through the reaction of phenyl isothiocyanate (1a), benzyl isothiocyanate (1b), phenethyl isothiocyanate (1c), or 3,4,5-trimethoxyphenyl isothiocyanate (1d) with the respective amine 2, in a dichloromethane or tert-butanol solution (Table 1). The reaction of isothiocyanates and amines was considered as a simple reaction, but it can exhibit high yields and it is possible to obtain a great structural diversity of substituted thioureas [18,24]. All aliphatic primary and secondary amines afforded the corresponding thioureas at room temperature in this protocol. In contrast, the reactions involving aromatic amines required a reflux period due to the lower reactivity of the amines, with tert-butanol as a non-volatile and non-nucleophilic solvent.
In addition, the piperazine thioureas (5a–5v) were synthesized through the reaction of isothiocyanate 1a–d and N-monosubstituted piperazine 4, in a dichloromethane solution at room temperature since these amines have enough nucleophilicity for a short-time reaction (1 h). The synthesis of these thiourea derivatives is outlined in Scheme 2, and the corresponding details are provided in Table 2.
All compounds were obtained with a good to excellent yield (greater than 70%), demonstrating the good viability of the synthetic strategy employed, and they were completely characterized by 1H-NMR, 13C-NMR, FT-IR, and HR-MS. NMR spectra for thiourea derivatives are available in the Supplementary Materials (Figures S1–S32). The 13C-NMR spectra exhibit a chemical shift corresponding to the thiocarbonyl (C=S) of the thiourea moiety within the range of 178 to 184 ppm, providing confirmation of product formation. Additionally, the formation of the compounds is evident in the 1H-NMR spectra, where characteristic signals (broad singlets) of hydrogen atoms linked to the nitrogen atoms of the thiourea moiety are observed. Typically, these signals appear between 5.50 and 6.30 ppm (NH attached to alkyl chain) and 7.30 and 8.50 ppm (NH attached to aryl substituents). In the 1H-NMR spectra of piperazine thioureas, the hydrogen signals of the piperazine ring are also discernible between 3.70 and 4.10 ppm and 2.40 and 3.10 ppm, usually appearing as two triplets. Furthermore, the HR-MS values of all synthesized compounds confirmed their molecular weight.
Despite its simplicity, involving only a single reaction step, this synthetic approach afforded seventeen thioureas (3r, 3s, 3a′, 3b′, 5c, 5f, 5h, 5i, 5k, 5l, 5o, 5p, 5r, 5s, 5t, 5u, and 5v) that have not been previously described in the literature.
2.2. Biological Activity
2.2.1. Anti-Leishmanial Activity and Toxicity of First-Generation Thioureas (G1)
Biological activity assays on the parasite were carried out in the promastigote and intracellular amastigote forms of L. amazonensis, and the toxicity was evaluated in murine macrophages. The first generation of thioureas (3a–3b′) was primarily assessed in the promastigote form. Out of the 28 compounds tested in this form, 12 exhibited activities with an IC50 ranging from 19.0 µM to 80.0 µM (Table 3). The thioureas 3d, 3e, 3p, and 3q exhibited IC50 values below 50.0 µM, following the respective order of potency, although none of them showed better results than miltefosine (6.9 ± 2.4 µM). Concerning toxicity, these compounds (3d, 3e, 3p, and 3q) did not exhibit toxicity up to the maximum tested concentration (400 µM) (Table 4). Thioureas 3d, 3e, and 3p maintained activity against intracellular amastigotes with the respective IC50 values as follows: 10.8 ± 2.4 µM, 4.9 ± 1.2 µM, and 8.7 ± 1.4 µM. However, compound 3q showed no activity even at the highest tested concentration (25 µM). In this first generation of thioureas, compound 3e emerged as the most promising, with an IC50 below 5.0 µM and a selectivity greater than 80 times, surpassing the positive control (miltefosine; IC50 = 7.5 ± 1.2 µM) against the amastigote form of L. amazonensis.
These first-generation tests revealed that the trimethoxylated compounds in R (Scheme 1, Table 3), except for thiourea 3a′, did not exhibit activity in the promastigote form (compounds 3x, 3y, 3z, and 3b′).
2.2.2. Anti-Leishmanial Activity and Toxicity of Second-Generation Thioureas (G2)
Thiourea derivatives containing a piperazine ring (5a–5v) were also evaluated as anti-leishmanial agents in assays using promastigotes and amastigotes of L. amazonensis. Eleven thioureas inhibited the proliferation of the promastigote form of the parasite, with IC50 values ranging from 6.9 to 90.2 µM (Table 5). Despite most of these compounds having IC50 values higher than those of miltefosine (6.9 ± 2.4 µM), thiourea 5i (6.9 ± 2.0 µM) demonstrated equivalent potency. Subsequently, the most potent thioureas (5e, 5g, 5h, 5i, 5k, 5l, 5n, 5q, and 5t) were evaluated against the amastigote form in a concentration of 10 µM, with only thioureas 5h, 5i, 5q, and 5t showing results within the tested concentration range and with IC50 values being between 1.8 and 8.8 µM (Table 6); however, compound 5q in the dose–response curve test presented an IC50 > 10µM. Toxicity in murine macrophages was also assessed, and despite piperazine thioureas generally being more cytotoxic compared to first-generation thioureas, compound 5i stood out with a selectivity index of about 70 times. Thiourea 5i (1.8 ± 0.5 µM) demonstrated greater potency than miltefosine (7.5 ± 1.2 µM) against the amastigote form of L. amazonensis.
2.3. Structure–Activity Relationship Study
Our objective with the structure–activity relationship studies was to determine if there was a correlation between the calculated physicochemical properties data (shown in Tables S1 and S2—Supplementary Materials) and the pharmacological activity of thioureas G1 and G2. Therefore, we collected the calculated parameters and the corresponding IC50 values into Table 7 and Table 8. As the two series of thiourea derivatives have structural differences arising from the amines used in the synthesis (aliphatic/aromatic amines or piperazines), correlations between their physicochemical parameters and inhibitory potencies against promastigotes of L. amazonensis were considered individually. Based on the limited database of thioureas assayed against amastigotes of L. amazonensis, it was not possible to explore any correlation of their structural features that enables rational exploration in SAR studies.
The main physicochemical properties that could influence the antipromastigote activity of these derivatives, such as lipophilicity, polarity, and isoelectric point, showed no correlation with their respective IC50 values. Nonetheless, as shown in Table 7, the properties that exhibited a significant and strong correlation (p-value < 0.05) with activity were the number of hydrogen bond acceptors (0.66), rotatable bonds (0.58), and hydrogen bond donors (0.58). Notably, this represents a positive correlation, indicating that an increase in these properties negatively impacts the compound’s potency.
Overall, the results obtained with the second-generation series of thioureas (G2) show a significant negative correlation (p-value < 0.05) between lipophilicity-related descriptors, including LogP (−0.82), Log(Koc) (−0.82), Log(BCF) (−0.82), the C Ratio (−0.75), and the number of aromatic rings (−0.75), and the IC50 of the compounds (Table 8). These results show a negative Pearson correlation, as IC50 values decrease with increasing lipophilicity, which enhances the antipromastigote potency of the compounds. As expected, the NO ratio (0.71) and Hetero Ratio (0.70), which contribute to decreasing the compound’s lipophilicity, exhibited a strong and significant positive correlation (p-value < 0.05) with IC50.
2.4. In Silico Pharmacokinetics and Toxicological Assessment
Unsatisfactory ADMET properties (absorption, distribution, metabolism, excretion, and toxicity) are a major cause of drug candidate failure [25]. In this scenario, accurate in silico tools for ADMET prediction, such as ADMET PredictorTM, could provide a rational basis for decision-making in the early phases of drug discovery [26]. ADMET PredictorTM is a machine learning tool trained on subsets of the World Drug Index (WDI), a comprehensive database of commercial drugs. The pharmacokinetics and toxicological assessment of ADMET PredictorTM are based on a risk system in which the score values achieved by the target compound are compared with those of the WDI empirical distribution (Simulations Plus, Inc., Lancaster, CA, USA). Compounds that exceed the established safety or efficacy limits for commercial drugs signal potential concerns. As shown in Table S3 (Supplementary Materials), the active thioureas synthesized by our group generally presented drug-like characteristics with low toxicity. Nonetheless, compounds 5g, 5h, 5i, 5k, and 5l may have metabolic problems due to elevated intrinsic clearance (CYP risk > 2). Despite that, compound 5i, which is the most active thiourea in the series, i.e., IC50 = 1.8 ± 0.5 µM (Table 6), was predicted to have low toxicity and optimal absorption, distribution, and excretion considering oral administration.
3. Discussion
In the first-generation series of thiourea derivatives (3a–3b′), any one of them showed better activity than miltefosine against the promastigote form of L. amazonensis. Despite these results, thiourea 3e stood out in the in vitro assay against the amastigote form (IC50 = 4.9 ± 1.2 µM), with better activity than that of the positive control (miltefosine IC50 = 7.5 ± 1.2 µM), showing the potential of this class of compounds against this protozoan. The success of compound 3e (IC50 < 10µM) against intracellular amastigotes is particularly relevant since the amastigote stage is responsible for the clinical symptoms in mammals and represents a critical therapeutic target, being one of the criteria pointed out by Katsuno et al. (2015) for choosing a hit for leishmaniasis [27]. In our SAR studies, findings suggest that, among the tested thioureas, the number of spacer carbons plays a crucial role in maintaining activity against both promastigotes and amastigotes of L. amazonensis. The lipophilicity of the substituents derived from isothiocyanate (Scheme 1) was a determinant for the activity in the first generation of thiourea derivatives (G1). The results indicate that spacer length (n) in these series influences the inhibition of promastigote growth. When comparing thioureas 3d and 3e, 3p and 3q, 3n and 3o, it is possible to observe that as the spacer size (n) increases, the biological activity decreases. No thiourea derived from phenethyl isothiocyanate showed activity against the promastigote form. Thus, it can be said that the increase in the lipophilicity (LogP) of the substituent from isothiocyanate results in a decrease in antipromastigote activity. In order to obtain a new series of thioureas, with greater potency and selectivity against the parasite, it was decided to investigate the incorporation of the piperazine ring in the structure of these derivatives, as already described by Mowbray et al. [28]. The authors identified a series of amino-pyrazole ureas (7) with potent in vitro anti-leishmanial activity, developed from a single high-throughput screening (HTS) hit (6) (Figure 2). In this way, it was possible to design the second generation of thiourea derivatives (5a–5v), obtained from different substituted piperazines.
In our studies, it was possible to observe that the incorporation of the piperazine ring into the thiourea function generally increased the potency of these derivatives, both against the promastigote and amastigote forms (Figure 3), also enhancing their respective selectivity indices.
Our research group previously demonstrated the leishmanicidal activity of several thiourea derivatives [18], identifying compound 8 as a prototype (Figure 3). This compound exhibited an IC50 value of 70.0 µM against Leishmania amazonensis amastigotes, with minimal cytotoxicity observed in host macrophages, and it showed greater potency than that of meglumine antimoniate (IC50 212.30 µM). It is noteworthy that additional studies have also highlighted the leishmanicidal activity of thiourea derivatives against various Leishmania species. Boechat et al. (2013) synthesized several compounds from different classes with leishmanicidal activity against L. amazonensis promastigotes. Among them, thiourea 9 (Figure 4) was selected as a prototype (IC50 45 µM), despite showing lower activity compared to that of pentamidine (IC50 0.46 μM), emphasizing the thiourea class as a promising group of leishmanicidal agents [29].
In another study, Díaz et al. (2019) synthesized a series of N-substituted thioureas containing selenium and evaluated their cytotoxic activity against Leishmania infantum amastigotes, with selectivity assessed in human THP-1 cells. The most active thiourea derivative (compound 10; Figure 4) exhibited anti-leishmanial activity (IC50 2.36 ± 0.44 µM; SI = 10.6), which was comparable to that of the reference drug miltefosine (IC50 2.84 ± 0.10 µM; SI = 7), but with a higher selectivity index [30]. Mohammadi-Ghalehbin et al. (2023) prepared a series of novel thiourea derivatives and subjected them to in vitro anti-leishmanial evaluation against Leishmania major promastigotes. Compound 11 (IC50 121.56 ± 1.41 µM) exhibited the highest activity after 48 h (Figure 4) but was less potent than amphotericin B (IC50 0.20 ± 0.01 µM), which was used as a positive control. Nevertheless, the potential of thioureas as a promising class in the search for new leishmanicidal agents was once again demonstrated [17].
Aligning with the correlation analysis presented in Table 8, in the second generation of thioureas (G2), the introduction of the benzhydryl group with piperazine, a bulky, hydrophobic moiety featuring two aromatic rings, into thioureas 5g–5i and 5t resulted in the formation of compounds with increased lipophilicity. Furthermore, when comparing 5a–5q to 5r–5v thioureas, the presence of a trimethoxy substituent within the R worsened the overall activity, indicating that the presence of heteroatoms negatively influences the compound’s potency despite both presenting aromatic groups. This trend aligns with the positive correlation existing between the NO ratio and heteroatoms, as indicated in Table 8.
In this series, increasing the spacer length (n) in thioureas 5g, 5h, and 5i resulted in an increase in lipophilicity and, consequently, antipromastigote activity. Despite the absence of a spacer (n = 0) in compound 5t, the presence of three methoxyl groups slightly increased its LogP value, thereby enhancing its potency. Although a similar trend can be observed in the antiamastigote activity of piperazine thioureas 5h, 5i, and 5t, it is not possible to establish a valid correlation in structure–activity relationship studies due to the low number of active compounds against this form of the parasite.
According to ADMET PredictorTM, ≅90% of commercial drugs available in the WDI subset possess ADMET risk ≤ 7, TOX risk ≤ 2, Absn risk ≤ 5, and CYP risk ≤ 2. These cut-offs serve as reference values to guide the evaluation of candidate compounds, ensuring they meet safety and bioavailability standards for oral administration. In this context, the pharmacokinetic and toxicological profiles of thiourea derivatives with anti-leishmanial activity were assessed using ADMET Predictor™ models and presented in Table S3 (Supplementary Materials). Based on the general ADMET risk model, all active thioureas synthesized by our group meet the safety and bioavailability criteria for oral administration, as none of them exceeded the cut-off value of 7 (Table S3).
Overall, compounds presenting the highest ADMET risk values, like 5h, 5i, and 5t, triggered risk flags primarily due to high lipophilicity (Kow), low water solubility (Sw), and elevated clearance by cytochrome P450 enzymes, particularly CYP2D6 and CYP3A4. Despite that, an assessment of individual models revealed that these compounds exhibit a favorable absorption profile, with relatively low absorption risks (≤4), suggesting their potential for favorable oral bioavailability. Conversely, 5g, 5h, 5i, 5k, and 5l raised concerns about possible metabolic issues due to elevated intrinsic clearance (CYP risk > 2). This characteristic can reduce the compound’s half-life, potentially compromising its activity at the target organ and leading to suboptimal therapeutic levels.
Despite the potential metabolic drawbacks, compounds 5g, 5h, 5i, 5k, and 5l were predicted to exhibit minimal toxicity (TOX Risk ≤ 2), along with favorable absorption profiles for oral administration (Absn Risk ≤ 4), suggesting their potential to mitigate these shortcomings. Notably, thiourea 5i, the most active compound, presented a global risk (ADMET risk) within 90% of the empirical distribution derived from the WDI, thus being similar to compounds expected for commercial drugs. It may be, therefore, a promising strategy for the development of a potent and safe anti-leishmanial compound.
The leishmanicidal activity of the molecules studied here represents a novel contribution, as no previous reports describe their biological activity against L. amazonensis. The piperazine thiourea scaffold not only introduces a new class of leishmanicidal compounds but also offers a promising foundation for developing more potent and selective drug candidates as therapies for leishmaniasis. While these studies provide valuable insights, future research could expand by testing these series of molecules against other Leishmania species of clinical relevance, given the diversity of species that cause leishmaniasis. Additionally, exploring in vivo disease models and investigating the mechanism of action of these molecules against Leishmania parasites offer exciting opportunities for further advancing our understanding and therapeutic development.
The results of thiourea 5i indicate a promising profile, making it a strong candidate for future tests aimed at evaluating its spectrum of action, pharmacokinetic profile, and efficacy in in vivo models. This derivative demonstrated both adequate potency and selectivity. When compared with other thiourea derivatives and piperazine-containing derivatives mentioned in Figure 1, it is evident that we have obtained a more potent and selective prototype relative to those previously reported.
4. Materials and Methods
4.1. Synthesis of Thioureas
4.1.1. General
The reagents and solvents used in the experiments were obtained from commercial sources and used without further purification. 1H and 13C-NMR spectra were realized on a Bruker 400 or 500 MHz spectrometer using chloroform (CDCl3) or dimethyl sulfoxide (DMSO-d6) as solvent. Chemical shifts were given in ppm (δ scale) and coupling constants (J) were given in hertz (Hz). The Infrared (IR) spectra was performed on a Shimadzu IRPrestige-21 FTIR spectrometer using anhydrous KBr pellets. High-resolution mass spectrometry (HR-MS) was recorded on a Bruker micrOTOF II mass spectrometer using electrospray ionization (ESI). The analysis of the melting point was carried out on a SHIMADZU DSC-60 thermal analyzer with a heating rate of 10 °C/min, room temperature to 300 °C, under a nitrogen flow rate of 50 mL/min, and using an aluminum standard. Analytical Thin-Layer Chromatography (TLC) was performed on precoated silica gel plates (aluminum sheets 60 F254, Merck, Darmstadt, Germany) using ethyl acetate-hexane (1:5 v/v) as the eluent.
4.1.2. Preparation of First-Generation (G1) Thioureas
Method A1: To a solution of isothiocyanate 1 (1.0 mmol; Scheme 1) in dichloromethane (10 mL), the corresponding amine 2 (1.2 mmol) was added, and the mixture was stirred at room temperature until isothiocyanate was consumed (TLC). After that, the reaction mixture was washed with 5% HCl(aq) (3 × 10 mL), dried with anhydrous Na2SO4, and evaporated in a rotary evaporator to afford the pure thiourea 3, which did not require further purification.
Method A2: In this method, the respective amine 2 (1.0 mmol) was added in a mixture of isothiocyanate 1 (1.2 mmol) and dichloromethane (10 mL) and was stirred at room temperature until amine was consumed (TLC). The solvent was then evaporated, and the crude product was washed at least three times with hexane until the excess of isothiocyanate was removed (TLC).
Method B1: To a solution of isothiocyanate 1 (1.0 mmol) in tert-butanol (10 mL), the corresponding amine 2 (1.2 mmol) was added, and the mixture was refluxed until isothiocyanate was consumed (TLC). Then, the solvent was evaporated, 10 mL of CH2Cl2 was added, and the same workup used in method A1 was followed.
Method B2: To a solution of isothiocyanate 1 (1.2 mmol) in tert-butanol (10 mL), the corresponding amine 2 (1.0 mmol) was added, and the mixture was refluxed until the amine was consumed (TLC). Then, the solvent was evaporated and the same workup used in method A2 was followed.
4.1.3. Preparation of Second-Generation (G2) Thioureas
To a solution of isothiocyanate 1 (1.1 mmol; Scheme 2) in dichloromethane (20 mL), the corresponding piperazine 4 (1.0 mmol) was added, and the mixture was stirred at room temperature for 1 h. The solvent was then evaporated, and the crude product was washed at least three times with hexane until the excess of isothiocyanate was removed (TLC).
All structures of thioureas 3 and 5 were confirmed by 1H-NMR, 13C-NMR, FT-IR, and HR-MS (Supplementary Materials). The Supplementary Materials provide the characterization data for all thiourea derivatives, with the exception of compounds 3c, 3d, 3e, 3g, 3h, 3m, 3o, 3p, 3v, 3w, 5a, 5b, 5d, 5e, 5j, 5m, 5n, and 5q, as these data have been previously reported by our research group [24].
4.2. Biological Assays
4.2.1. Stock Solutions of Thioureas
The thioureas (3a–3b′ and 5a–5v) were solubilized in dimethyl sulfoxide (DMSO) to obtain a stock solution of 50 mmol/L and stored at −20 °C.
4.2.2. Parasite Culture
Leishmania amazonensis promastigotes (strain MHOM/BR/77/LTB0016) were routinely obtained from the lesion of BALB/c mice and maintained in vitro as promastigotes to, at most, the fifth passage and maintained at 26 °C in Schneider’s medium supplemented with 10% fetal bovine serum (FBS), 100 μg/mL streptomycin, and 100 U/mL penicillin. Studies in L. amazonensis-infected BALB/c mice were performed following the guidelines of the Guide for the Care and Use of Laboratory Animals of the Brazilian National Council of Animal Experimentation (COBEA). This study was approved by the Animal Ethics Committee of Oswaldo Cruz Institute (L26/2015).
4.2.3. Antipromastigote Assay
Promastigotes of L. amazonensis at 1 × 106 cells/mL were incubated with different concentrations of thiourea compounds (0–100 µM) for 72 h at 26 °C. The assays were performed in triplicate in 96-well plates (Costar, New York, NY, USA). Inhibition parasite growth was assessed by a fluorescent assay, resazurin (Sigma-Aldrich, St. Louis, MO, USA) [31]. Briefly, 50 µM of resazurin (final concentration) was added per well, and then the samples were incubated for an additional 3 h. The fluorescence was measured using a Spectra Max GEMINI XPS spectrofluorometer (Molecular Devices, Silicon Valley, CA, USA) at excitation and emission wavelengths of 560 nm and 590 nm, respectively. IC50 value was calculated by nonlinear regression using Graph Pad Prism 9.0.
4.2.4. Toxicity Assay in Murine Macrophages
Mouse peritoneal macrophages (2 × 106 cells/mL) in 96-well plates were treated with different concentrations of thiourea compounds (G1: 0–400 µM and G2: 0–125 µM) for 72 h at 37 °C/5% CO2. After removing the supernatant, viable cells were quantified by adding resazurin in phosphate-buffered saline, a final concentration of 50 µM, and then the samples were incubated for an additional 3 h. The fluorescence was measured using a Spectra Max GEMINI XPS spectrofluorometer (Molecular Devices, Silicon Valley, CA, USA) at excitation and emission wavelengths of 560 nm and 590 nm, respectively. The percentage of viable cells was calculated relative to the control cells. The cytotoxic concentrations lethal to 50% of the cells (CC50) were obtained by nonlinear regression of the sigmoid growth curves using the Graph Pad Prism 9.0 software.
4.2.5. Antiamastigote Assay
Resident macrophages from BALB/c mice were obtained by peritoneal lavage with 5 mL of cold RPMI medium. The cell suspension was adjusted to a 2 × 106 cells/mL concentration and plated in LAB-TEK chambers. After 1 h, the cultures were washed with phosphate-buffered saline at 37 °C to remove non-adherent cells. The remaining cells were incubated at 37 °C/5% CO2 with promastigotes of L. amazonensis at a ratio of 3:1. After 3 h, the chambers were rewashed to remove free parasites. The monolayers were incubated with different concentrations of thiourea compounds (0–10 µM) for 72 h at 37 °C/5% CO2. For G2, we first tested only at a concentration of 10 µM, and derivatives with inhibition above 60% were evaluated using the dose–response curve. The antiamastigote activity was evaluated microscopically after staining the chambers with the Instant Prov hematological dye system (Newprov, Curitiba, Brazil); at least 100 macrophages were counted per sample. The results were expressed as the infection index (IF) using the following formula: IF = % infected cells X (number of amastigotes/total macrophages). The IC50 value was determined by nonlinear regression using Graph Pad Prism 9.0.
4.3. Structure–Activity Relationship Analysis
The scipy package available in Python [32] was used to calculate Pearson correlation coefficients between the experimental activity of anti-leishmanial compounds (IC50) and their corresponding physiochemical parameters as predicted by the ACD/Percepta software, version 14.52.0 (Advanced Chemistry Development. Inc., Toronto, ON, Canada).
4.4. In Silico Pharmacokinetics and Toxicological Assessment
The pharmacokinetics and toxicity profile of the anti-leishmanial thiourea compounds were characterized in silico using the ADMET Predictor™ 10.4 (Simulations Plus, Inc., Lancaster, CA, USA). This software integrates highly accurate QSAR (Quantitative Structure–Activity Relationship) models, typically yielding R2 values between 0.7 and 0.9, into a risk assessment system that establishes cut-off points based on the analysis of 2260 commercial drugs from the World Drug Index (WDI). As a result, chemical compounds that exceed the established safety or efficacy limits for commercial drugs incur risk penalties. The overall ADMET risk factor combines three statistical models: TOX risk (toxicity), Absn risk (absorption), and CYP risk (metabolism), in addition to two distribution/excretion parameters: volume of distribution (Vd) and fraction unbound (Fu). These components collectively provide a comprehensive evaluation of a compound’s pharmacokinetic and toxicological profiles.
Hepatotoxicity, mutagenicity, carcinogenicity, cardiotoxicity, and acute toxicity were combined into a toxicity model, henceforth called TOX risk. Hepatotoxicity was estimated by assessing the serum levels of liver-damage-related enzymes associated with hepatic damage, including alanine aminotransferase (ALT), aspartate aminotransferase (AST), lactate dehydrogenase (LDH), alkaline phosphatase (ALP), and gamma-glutamyltransferase (GGT). Mutagenicity was assessed using Ames’s test models, which simulate in silico assays with a variety of Salmonella typhimurium strains (i.e., TA97, TA98, TA100, TA1535, and TA1537), as well as the repair-deficient Escherichia coli strain WP2, both with and without activation by the metabolic S9 fraction. Acute rat toxicity was estimated based on the amount of orally administered chemicals required to kill half of the rats tested within 24 h. The cardiotoxicity model was based on hERG (Ether-à-go-go-Related Gene) inhibition. Carcinogenicity was evaluated using rat- and mouse-based models considering a chronic oral daily dose administration required to produce tumors in 50 percent of the population.
The absorption risk (Absn risk) model was used to better understand the potential oral absorption problems the anti-leishmanial thiourea compounds might have based on their physiochemical characteristics: molar weight (MW, g/mol), octanol/water partition coefficient (logP), octanol/water distribution coefficient at pH 7.4 (logD), topological polar surface area (TPSA), number of hydrogen bond donors (HBDs), hydrogen bond acceptors (HBAs), number of rotatable bonds, and the ionization constant (pKa) of the most basic chemical group. At last, the metabolic risk (CYP risk) was assessed based on the compounds’ oxidation by cytochrome P450 (CYP) enzymes. Compounds are flagged as high-risk if they exhibit elevated intrinsic clearance levels, assessed through recombinant assays for CYP1A2, CYP2C9, CYP2C19, CYP2D6, and CYP3A4, in addition to a human liver microsomal model.
5. Conclusions
In summary, our study highlights the potential of thiourea derivatives as promising candidates for anti-leishmanial drug development, particularly against Leishmania amazonensis. Compound 3e from the first generation and compound 5i from the second generation demonstrated significant activity, with 5i showing both high potency and selectivity. SAR analysis revealed that the structural features, such as carbon spacer length and lipophilicity, are key to optimizing anti-leishmanial activity. Moreover, ADMET predictions confirmed that compound 5i possesses a favorable pharmacokinetic and toxicity profile, suggesting its potential for further in vivo studies. These findings provide valuable insights for the development of potent and safe anti-leishmanial agents.
Conceptualization, G.M.V., E.F.d.C.-J., L.M.C. and E.C.T.-S.; methodology, G.M.V., E.F.d.C.-J., P.W.M.C.A., M.G.R., Y.S.d.S.E., L.M.d.S.S. and G.R.C.P.; software, G.R.C.P. and C.R.R.; formal analysis, G.M.V., E.F.d.C.-J., L.M.C. and E.C.T.-S.; investigation, G.M.V., E.F.d.C.-J., L.M.C. and E.C.T.-S.; resources, C.R.R., L.M.C. and E.C.T.-S.; data curation, G.M.V., E.F.d.C.-J., P.W.M.C.A., M.G.R., Y.S.d.S.E., L.M.d.S.S. and G.R.C.P.; writing—original draft preparation, G.M.V. and E.F.d.C.-J.; writing—review and editing, C.R.R., L.M.C. and E.C.T.-S.; visualization, G.M.V., E.F.d.C.-J., L.M.C. and E.C.T.-S.; supervision, L.M.C. and E.C.T.-S.; project administration, G.M.V., E.F.d.C.-J., L.M.C. and E.C.T.-S.; funding acquisition, C.R.R., L.M.C. and E.C.T.-S. All authors have read and agreed to the published version of the manuscript.
Not applicable.
Not applicable.
Data are contained within the article and the
The authors also thank Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) and Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq).
The authors declare no conflicts of interest.
Footnotes
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Figure 1. Thiourea and piperazine derivatives as anti-leishmanial agents [16,17,18,19,21,23].
Scheme 1. Synthesis of first-generation series of thiourea derivatives: (a) general synthesis scheme; (b) thioureas 3a–3w obtained from phenyl isothiocyanate (1a), benzyl isothiocyanate (1b), and phenethyl isothiocyanate (1c); (c) thioureas 3x–3b′ obtained from 3,4,5-trimethoxyphenyl isothiocyanate (1d).
Scheme 2. Synthesis of second-generation series of thiourea derivatives: (a) general synthesis scheme; (b) thioureas 5a–5q obtained from phenyl isothiocyanate (1a), benzyl isothiocyanate (1b), and phenethyl isothiocyanate (1c); (c) thioureas 5r–5v obtained from 3,4,5-trimethoxyphenyl isothiocyanate (1d).
Figure 2. Hit optimization of urea derivatives containing piperazine ring designed by Mowbray et al. (2015) [28].
Figure 4. Thiourea derivatives as anti-leishmanial agents previously described in the literature [17,29,30].
Reaction conditions and yields for first-generation thioureas 3a–3b′.
Thiourea a | Method b | Time (h) | Yield (%) c | R | R1 | R2 | n |
---|---|---|---|---|---|---|---|
3a | A1 | 2.0 | 70 | H | 4-Morpholinyl | - | 0 |
3b | A2 | 2.0 | 99 | H | 4-Morpholinyl | - | 1 |
3c | A1 | 2.0 | 70 | H | 4-Morpholinyl | - | 2 |
3d | B2 | 20.0 | 92 | H | Pyridin-2-yl | H | 0 |
3e | B2 | 8.0 | 99 | H | Pyridin-2-yl | H | 1 |
3f | B2 | 7.0 | 76 | H | Pyridin-2-yl | H | 2 |
3g | B2 | 4.0 | 96 | H | 4-OMe-Ph | H | 0 |
3h | B2 | 3.0 | 97 | H | 4-OMe-Ph | H | 1 |
3i | B1 | 2.0 | 70 | H | 3,4-OMe-Ph | H | 1 |
3j | B1 | 3.0 | 99 | H | 3,4-OMe-Ph | H | 2 |
3k | B1 | 2.0 | 76 | H | 3,5-OMe-Ph | H | 1 |
3l | B1 | 6.0 | 75 | H | 3,5-OMe-Ph | H | 2 |
3m | B1 | 3.0 | 99 | H | 3,4,5-OMe-Ph | H | 2 |
3n | A2 | 6.0 | 70 | H | NHCOPh | H | 0 |
3o | A2 | 6.0 | 70 | H | NHCOPh | H | 1 |
3p | B2 | 2.0 | 96 | H | 4-Br-Ph | H | 0 |
3q | B2 | 3.0 | 92 | H | 4-Br-Ph | H | 1 |
3r | B1 | 3.0 | 97 | H | 5-Me-1,3,4-thiadiazol-2-yl | H | 0 |
3s | B1 | 2.0 | 80 | H | 5-Et-1,3,4-thiadiazol-2-yl | H | 1 |
3t | A1 | 1.0 | 75 | H | Bu | H | 0 |
3u | B1 | 2.0 | 75 | H | 2-Me-Ph | H | 1 |
3v | B2 | 3.0 | 99 | H | 3-OH-Ph | H | 1 |
3w | A2 | 4.0 | 92 | H | (S,R,R,R)-CH2[CH(OH)]4CH2OH | Me | 1 |
3x | A1 | 2.0 | 89 | OMe | 4-Morpholinyl | - | 0 |
3y | A2 | 10.0 | 76 | OMe | Pyridin-2-yl | H | 0 |
3z | B1 | 6.0 | 94 | OMe | 3,4-OMe-Ph | H | 0 |
3a′ | B1 | 4.0 | 95 | OMe | 5-CF3-1,3,4-thiadiazol-2-yl | H | 0 |
3b′ | A1 | 2.0 | 94 | OMe | Bu | H | 0 |
a Products were characterized by physical and spectroscopic methods. b Method A1: isothiocyanate (1.0 mmol), amine (1.2 mmol), dichloromethane, r.t. Method A2: isothiocyanate (1.2 mmol), amine (1.0 mmol), dichloromethane, r.t. Method B1: isothiocyanate (1.0 mmol), amine (1.2 mmol), tert-butanol, reflux. Method B2: isothiocyanate (1.2 mmol), amine (1.0 mmol), tert-butanol, reflux. c Isolated yield.
Reaction conditions and yields for second-generation thioureas 5a–v.
Thiourea a | Yield (%) b | R | R3 | n |
---|---|---|---|---|
5a | 72 | H | Tetrahydrofuran-2-carbonyl | 0 |
5b | 90 | H | Tetrahydrofuran-2-carbonyl | 1 |
5c | 99 | H | Tetrahydrofuran-2-carbonyl | 2 |
5d | 99 | H | 3,4-Methylenedioxy-benzyl | 0 |
5e | 99 | H | 3,4-Methylenedioxy-benzyl | 1 |
5f | 93 | H | 3,4-Methylenedioxy-benzyl | 2 |
5g | 99 | H | Benzhydryl | 0 |
5h | 99 | H | Benzhydryl | 1 |
5i | 99 | H | Benzhydryl | 2 |
5j | 99 | H | 2-Cl-Ph | 0 |
5k | 99 | H | 2-Cl-Ph | 1 |
5l | 97 | H | 2-Cl-Ph | 2 |
5m | 93 | H | 2,3,4-OMe-Benzyl | 0 |
5n | 92 | H | 2,3,4-OMe-Benzyl | 1 |
5o | 76 | H | 2,3,4-OMe-Benzyl | 2 |
5p | 86 | H | Benzoimidazol-2-yl | 0 |
5q | 85 | H | Benzoimidazol-2-yl | 2 |
5r | 95 | OMe | Tetrahydrofuran-2-carbonyl | 0 |
5s | 99 | OMe | 3,4-Methylenedioxy-benzyl | 0 |
5t | 99 | OMe | Benzhydryl | 0 |
5u | 99 | OMe | 2-Cl-Ph | 0 |
5v | 70 | OMe | 2,3,4-OMe-Benzyl | 0 |
Method: isothiocyanate (1.1 mmol), piperazine (1.0 mmol), dichloromethane, r.t., 1.0 h. a Products were characterized by physical and spectroscopic methods. b Isolated yield.
Activity of the thiourea derivatives (G1) against L. amazonensis promastigote.
Thiourea | IC50 (µM) |
---|---|
3a | >100 a |
3b | >100 a |
3c | >100 a |
3d | 19.9 ± 3.9 |
3e | 25.4 ± 8.3 |
3f | >100 a |
3g | >100 a |
3h | 61.6 ± 6.5 |
3i | >100 a |
3j | >100 a |
3k | >100 a |
3l | >100 a |
3m | >100 a |
3n | 77.0 ± 6.8 |
3o | 80.4 ± 10.0 |
3p | 32.9 ± 9.5 |
3q | 44.4 ± 10.6 |
3r | 65.8 ± 8.2 |
3s | 58.4 ± 1.9 |
3t | 60.0 ± 6.4 |
3u | 56.2 ± 4.2 |
3v | >100 a |
3w | >100 a |
3x | >100 a |
3y | >100 a |
3z | >100 a |
3a′ | 77.8 ± 6.7 |
3b′ | >100 a |
Miltefosine | 6.9 ± 2.4 |
a Compounds did not show activity up to the maximum concentration tested (100 µM).
Antiamastigote activity and murine macrophage toxicity of the thiourea derivatives (G1).
Thiourea | IC50 (μM) | CC50 | SI |
---|---|---|---|
3d | 10.8 ± 2.4 | >400 | >37 |
3e | 4.9 ± 1.2 | >400 | >81.6 |
3p | 8.7 ± 1.4 | >400 | >45.9 |
3q | >25 a | >400 | - |
Miltefosine | 7.5 ± 1.2 | 109.7 ± 2.0 | 14.6 |
a Compounds did not show activity up to the maximum concentration tested (25 µM).
Activity of the thiourea derivatives (G2) against L. amazonensis promastigote.
Thiourea | IC50 (µM) |
---|---|
5a | >128 |
5b | 77.5 ± 4.5 |
5c | >128 |
5d | 90.2 ± 2.9 |
5e | 30.3 ± 4.6 |
5f | >128 |
5g | 30.7 ± 3.2 |
5h | 7.9 ± 1.9 |
5i | 6.9 ± 2.0 |
5j | >128 |
5k | 30.7 ± 3.0 |
5l | 28.2 ± 2.5 |
5m | >128 |
5n | 42.5 ± 1.6 |
5o | >128 |
5p | >128 |
5q | 18.8 ± 3.1 |
5r | >128 |
5s | >128 |
5t | 22.3 ± 1.6 |
5u | >128 |
5v | >128 |
Miltefosine | 6.9 ± 2.4 |
Antiamastigote activity and murine macrophage toxicity of the thiourea derivatives (G2).
Thiourea | IC50 | CC50 | SI |
---|---|---|---|
5e | >10 a | 121.8 ± 2.8 | - |
5g | >10 a | >125 | - |
5h | 8.8 ± 3.5 | >125 | >14.2 |
5i | 1.8 ± 0.5 | >125 | >69.4 |
5k | >10 a | 68.3 ± 2.8 | - |
5l | >10 a | 79.5 ± 19.8 | - |
5n | >10 a | 88.3 ± 5.6 | - |
5q | >10 | 72.9 ± 32.2 | |
5t | 4.9 ± 1.2 | 81.3 ± 16.9 | 16.6 |
Miltefosine | 7.5 ± 1.2 | 109.7 ± 2.0 | 14.6 |
a Compounds did not show activity up to the maximum concentration tested (10 µM).
Correlation between the experimental IC50 for the active thiourea compounds G1 against L. amazonensis promastigotes and their corresponding physiochemical parameters predicted by ACD/Percepta.
Physiochemical Parameter | Pearson Correlation Coefficient | p-Value |
---|---|---|
Hydrogen Bond Acceptors | 0.65756 | 0.02012 |
Rotatable Bonds | 0.58450 | 0.04594 |
Hydrogen Bond Donors | 0.58297 | 0.04665 |
NO Ratio | 0.55691 | 0.05998 |
TPSA | 0.5475 | 0.06536 |
Parachor (cm3) | 0.52447 | 0.08001 |
Molar Volume (cm3) | 0.49650 | 0.10060 |
Hetero Ratio | 0.44640 | 0.1457 |
C Ratio | −0.40422 | 0.19248 |
Molar Refractivity | 0.36363 | 0.24526 |
Polarizability | 0.36363 | 0.24526 |
Isoelectric point | −0.3496 | 0.26523 |
Surface Tension (dyne/cm) | −0.32867 | 0.29690 |
Molecular Weight | 0.32867 | 0.29690 |
Log(BCF) | 0.23076 | 0.47053 |
Log(Koc) | 0.23076 | 0.47053 |
LogP | 0.23076 | 0.47053 |
Number of Aromatic Rings | −0.04367 | 0.89280 |
N Ratio | 0.03880 | 0.90470 |
Correlation between the experimental IC50 for the active thiourea compounds G2 against L. amazonensis promastigotes and their corresponding physiochemical parameters predicted by ACD/Percepta.
Physiochemical Parameter | Pearson Correlation Coefficient | p-Value |
---|---|---|
LogP | −0.8246 | 0.00178 |
Log(Koc) | −0.8246 | 0.00178 |
Log(BCF) | −0.8246 | 0.00178 |
C Ratio | −0.7517 | 0.0076 |
Number of Aromatic Rings | −0.7504 | 0.00779 |
NO Ratio | 0.7133 | 0.01371 |
Hetero Ratio | 0.70346 | 0.01571 |
Molar Refractivity | −0.6833 | 0.0204 |
Polarizability | −0.6833 | 0.02044 |
Parachor (cm3) | −0.6059 | 0.04816 |
Molar Volume (cm3) | −0.6013 | 0.05033 |
Molecular Weight | −0.5785 | 0.06220 |
Rotatable Bonds | −0.5592 | 0.07365 |
Isoelectric point | −0.4100 | 0.21040 |
Surface Tension (dyne/cm) | 0.36446 | 0.27046 |
Hydrogen Bond Acceptors | 0.33915 | 0.30757 |
Hydrogen Bond Donors | −0.30068 | 0.36893 |
N Ratio | 0.25585 | 0.44762 |
TPSA | 0.19209 | 0.5715 |
Supplementary Materials
“References [
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Abstract
Background: Leishmaniasis, caused by Leishmania protozoa and transmitted by vectors, presents varied clinical manifestations based on parasite species and host immunity. The lack of effective vaccines or treatments has prompted research into new therapies, including thiourea derivatives, which have demonstrated antiprotozoal activities. Methods: We synthesized two series of N,N′-disubstituted thiourea derivatives through the reaction of isothiocyanates with amines. These compounds were evaluated in vitro against promastigote and amastigote forms of L. amazonensis, alongside cytotoxicity assessments on macrophages. In silico studies were conducted to analyze structure–activity relationships (SARs) and drug-likeness. Results: A total of fifty thiourea derivatives were synthesized and tested. Compound 3e from the first generation exhibited significant anti-leishmanial activity with an IC50 of 4.9 ± 1.2 µM and over 80-fold selectivity compared to that of miltefosine (IC50 = 7.5 ± 1.2 µM). The introduction of a piperazine ring in the second-generation thioureas enhanced potency and selectivity, with compound 5i achieving an IC50 of 1.8 ± 0.5 µM and a selectivity index of approximately 70. Pharmacokinetic predictions indicated favorable profiles for the active compounds. Conclusions: SAR and ADMET analyses identified compound 5i as the most promising candidate for further preclinical evaluation, suggesting that piperazine thiourea derivatives represent a novel class of anti-leishmanial agents.
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1 Laboratório de Tecnologia Industrial Farmacêutica, Faculdade de Farmácia, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-590, Brazil;
2 Laboratório de Imunoparasitologia, Unidade Integrada de Pesquisa em Produtos Bioativos e Biociências, Centro Multidisciplinar UFRJ-Macaé, Universidade Federal do Rio de Janeiro, Macaé 27970-000, Brazil;
3 Laboratório de Bioquímica de Tripanosomatídeos, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro 21040-900, Brazil;
4 Laboratório ModMolQSAR, Faculdade de Farmácia, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-590, Brazil;