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© 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.

Abstract

In recent years, the digital polymerase chain reaction has received increasing interest as it has emerged as a tool to provide more sensitive and accurate detection of minimal residual disease. In order to start the process of data alignment, we assessed the consistency of the BCR-ABL1 quantification results of the analysis of 16 RNA samples at different levels of disease. The results were obtained by two different laboratories that relied on The Qx100/Qx200 Droplet Digital PCR System (Bio-Rad) and Quant Studio 3D dPCR System (Thermofisher) platforms. We assessed the compatibility between the estimated values by linear regression, Bland–Altman bias-plot, and Mann–Whitney nonparametric test. The results confirmed the compatibility of the measures, allowing us tocompute an ‘alignment factor’ (AF), equal to 1.41, which was further validated by a different series of experiments. We conclude that the performed measurements by the two laboratories are comparable, and also equalized through the introduction of an alignment factor.

Details

Title
Alignment of Qx100/Qx200 Droplet Digital (Bio-Rad) and QuantStudio 3D (Thermofisher) Digital PCR for Quantification of BCR-ABL1 in Ph+ Chronic Myeloid Leukemia
Author
Fava, Carmen 1 ; Bernardi, Simona 2   VIAFID ORCID Logo  ; Enrico Marco Gottardi 3 ; Lorenzatti, Roberta 3 ; Galeotti, Laura 4 ; Ceccherini, Francesco 4 ; Cordoni, Francesco 4 ; Daraio, Filomena 3 ; Giugliano, Emilia 3 ; Jovanovski, Aleksandar 1   VIAFID ORCID Logo  ; Petiti, Jessica 1   VIAFID ORCID Logo  ; Varotto, Marta 5 ; Barberio, Davide 5 ; Rege-Cambrin, Giovanna 3 ; Berchialla, Paola 1   VIAFID ORCID Logo  ; Sciannameo, Veronica 6   VIAFID ORCID Logo  ; Malagola, Michele 2 ; Saglio, Giuseppe 1 ; Russo, Domenico 2 

 Department of Clinical and Biological Sciences, University of Turin, AOU San Luigi Gonzaga, Orbassano, 10043 Turin, Italy; [email protected] (A.J.); [email protected] (J.P.); [email protected] (P.B.); [email protected] (G.S.) 
 Unit of Blood Diseases and Stem Cell Transplantation, DPT of Clinical and Experimental Sciences, University of Brescia, ASST SpedaliCivili di Brescia, 25123 Brescia, Italy; [email protected] (S.B.); [email protected] (M.M.); [email protected] (D.R.) 
 Division of Internal Medicine and Hematology, San Luigi Gonzaga Hospital, Orbassano, 10043 Turin, Italy; [email protected] (E.M.G.); [email protected] (R.L.); [email protected] (F.D.); [email protected] (E.G.); [email protected] (G.R.-C.) 
 PhymtechSrl, Via F.lli Rosselli 8, Madonna dell’Acqua, San Giuliano Terme, 56017 Pisa, Italy; [email protected] (L.G.); [email protected] (F.C.); [email protected] (F.C.) 
 Bioclarmas.r.l. Research and Molecular Diagnostics, 10126 Torino, Italy; [email protected] (M.V.); [email protected] (D.B.) 
 Unit of Biostatistics, Department of Cardiac, Thoracic and Vascular Sciences, Epidemiology and Public Health, University of Padova, 35128 Padova, Italy; [email protected] 
First page
35
Publication year
2021
Publication date
2021
Publisher
MDPI AG
e-ISSN
20799721
Source type
Scholarly Journal
Language of publication
English
ProQuest document ID
2544482090
Copyright
© 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.